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Posts by Victor Paton

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Thank you to all the speakers, participants, supporters, and organizers who made the 27th EMBL PhD Symposium a success!

Our theme, β€œShaping Tomorrow,” inspired bold thinking on innovation, ethics, and society.

Excited to see you all at the 28th EMBL PhD Symposium next year!

4 months ago 1 3 0 0
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Fumio Nakaki, from the Sharpe Group at EMBL Barcelona, has quantified the risk of stealth multiplets in multiplexed conditions, highlighting when and how these artefacts can still sneak into your data.

www.embl.org/news/science...

7 months ago 5 3 1 0
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πŸ“’ Recruitment for the EMBL International PhD Programme is officially open!

At EMBL, we train young scientists to become skilled and creative future leaders in academia and other sectors. Join us and get a head start on your career in life sciences!

bit.ly/47mmiFF

7 months ago 39 43 0 3
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Find out how video games helped scientists visualise limb development.

Laura AviΓ±Γ³-Esteban, PhD student at EMBL Barcelona and first author of a recently published study, explains how video games helped her solve the problem of fragmented limb dev. visualisation. πŸ’»πŸ§ͺ

www.embl.org/news/science...

1 year ago 30 9 1 1
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🚨 Deadline extension alert 🚨

You have until 21 March to apply for #EMBOMulticellModelling ➑️ https://s.embl.org/mmc25-01-bl

Join us as we explore the dynamics of multicellular systems, covering both the molecular and the mechanical sides in 2D and 3D.

πŸ—“οΈ 14 – 20 June 2025
πŸ“ EMBL Barcelona

1 year ago 7 4 0 1
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Congratulations Laura Avinyo! @lauavinyo.bsky.social and Heura Cardona! First paper of your PhD πŸŽ‰. doi.org/10.1242/dev.... Beautiful quantified trajectory of how the skeletal pattern of the gene Sox9 emerges during limb development. @embl.org @barcelonacollaboratorium.com

1 year ago 55 15 2 1

The first version of NetworkCommons is now published in Bioinformatics. Next, we’ll focus on involving more of the network biology community.
academic.oup.com/bioinformati...
In parallel, we’ll continue expanding benchmarks and developing new applications.
Interested in contributing? Reach out! ⬇️

1 year ago 44 20 0 1

Hot of the press!! Whether you feel your data can benefit from network biology, you’re a method developer, or you have some strategies to evaluate networks, check this out! NetworkCommons is actively looking for contributions :)

1 year ago 5 1 0 0

Excited to share our new paper! If you’re interested in glycoproteomics, be sure to check it out πŸ‘‡

Huge kudos to all coauthors, especially the amazing glycoteam: Clement, @miraburtscher.bsky.social, Isabelle, and Misha (@savitski-lab.bsky.social)!

1 year ago 9 5 0 0
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EMBL International PhD Programme Summer Recruitment Applications open. Applications close 10 March 2025.

EMBL International PhD Programme Summer Recruitment Applications open. Applications close 10 March 2025.

Recruitment for the EMBL International PhD Programme is officially open! πŸ”Š

At EMBL, we train young scientists to become skilled and creative future leaders in academia, industry & other sectors. Start your career in the life sciences with us!

www.embl.org/about/info/e...

πŸ§ͺ #AcademicSky #careers

1 year ago 29 16 0 0
FIB-SEM dataset visualized with Microscopy Nodes, data from Mocaer et al 2023

FIB-SEM dataset visualized with Microscopy Nodes, data from Mocaer et al 2023

Microscopy Nodes is now up on bioRxiv! πŸš€

This is a Blender extension that seamlessly integrates and visualizes 3D microscopy data (TIF & @zarr.dev).

High-quality volume rendering for anyone, in both EM and fluorescence, regardless of computational expertise! πŸ”¬

www.biorxiv.org/content/10.1...

1 year ago 333 124 9 12
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✨#EMBOMulticellModelling is open for registration!

This course was designed for experimental biologists to learn the fundamentals of multicellular modelling and gain experience with computational techniques. Apply by 8 March ➑️ s.embl.org/mmc25-01-bl

πŸ—“οΈ 14 – 20 June 2025
πŸ“ EMBL Barcelona

1 year ago 4 2 0 0
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Vacature: PhD candidate in gene regulatory mechanisms underpinning cardiovascular diseases We are seeking a motivated PhD student to join our lab at Erasmus University Medical Centre in Rotterdam, exploring the gene regulatory mechanisms underpinning cardiovascular diseases. Type 2 diabetes...

Come do a PhD with me! πŸ–₯️🧬

We've got very exciting multiomics data coming in, you get to shape the project and there are lots of opportunities to collaborate and learn.

Reach out here or via email if you have questions

Please reskeet πŸ™

www.werkenbijerasmusmc.nl/en/vacancy/1...

1 year ago 11 4 0 1
GRETA graphical abstract

GRETA graphical abstract

We present Gene Regulatory nETwork Analsyis (GRETA), a framework to infer, compare and evaluate gene regulatory networks #GRNs. With it, we have benchmarked multimodal and unimodal GRN inference methods. Check the results here πŸ‘‡
Paper: doi.org/10.1101/2024.12.20.629764
Code: github.com/saezlab/greta

1 year ago 127 46 1 5

NetworkCommons is out! It's been a lot of fun to work on this project, please consider contributing to this exciting initiative to democratise network biology πŸͺ

Thanks a lot to all coauthors especially Denes, @martingarridorc.bsky.social and @juliosaezrod.bsky.social

1 year ago 10 4 1 0

Enhorabona Pau!

1 year ago 1 0 0 0