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Top left to right: The culture in a Petri dish shows light-coloured colonies of Streptomyces rimosus ATCC 10970 growing on a yellowish medium. A blue arrow points from the Petri dish to the linear genomic map. This horizontal line represents a biosynthetic gene cluster. The vertical colour bars indicate specific genes, numbered 1, 3, 6, 9, 14, 21, 23, and then further right, numbers 29, 30, 31, 35, 44 and 45, which code for the enzymes needed to build complex molecules.
Bottom of the picture shows two chemical products. Thin blue lines lead from specific sections of the gene cluster to the chemical structures of two secondary metabolites: oxytetracycline (OTC), a broad-spectrum antibiotic, shown on the left side. The structure shows its characteristic four-ring core. On the right is a much larger, more complex structure of rimocin (RIM), an antifungal compound.

Top left to right: The culture in a Petri dish shows light-coloured colonies of Streptomyces rimosus ATCC 10970 growing on a yellowish medium. A blue arrow points from the Petri dish to the linear genomic map. This horizontal line represents a biosynthetic gene cluster. The vertical colour bars indicate specific genes, numbered 1, 3, 6, 9, 14, 21, 23, and then further right, numbers 29, 30, 31, 35, 44 and 45, which code for the enzymes needed to build complex molecules. Bottom of the picture shows two chemical products. Thin blue lines lead from specific sections of the gene cluster to the chemical structures of two secondary metabolites: oxytetracycline (OTC), a broad-spectrum antibiotic, shown on the left side. The structure shows its characteristic four-ring core. On the right is a much larger, more complex structure of rimocin (RIM), an antifungal compound.

Modulating Complex Secondary Metabolism in Streptomyces rimosus🧫 by Targeted Genome Engineering πŸ§¬πŸ”¬
www.ftb.com.hr/archives/198...
#biosyntheticgenecluster #Oxytetracycline #rimocidin #GeneRegulation #SDG9 #ftbjournal #DiamondOpenAccess

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Evolution and horizontal transfer of the psilocybin biosynthetic gene cluster drive the diversification of magic mushrooms

#biosyntheticgenecluster
#fungaldiversity
#horizontalgenetransfer
#magicmushrooms
#psilocybin

www.mycosphere.org/pdf/MYCOSPHE...

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Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis - Nature Communications Withanolides are plant steroids with potent bioactivities found in many medicinal plants including Withania somnifera, but their biosynthetic pathway is largely unknown. Here, the authors report the g...

Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis
doi.org/10.1038/s414...

#Genomics #Withanolides #SpecializedMetabolism #BiosyntheticGeneCluster #LongReadSequencing #MetabolicEngineering #OpenAccess #OpenData

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CAGEcleaner: reducing genomic redundancy in gene cluster mining AbstractMotivation. Mining homologous biosynthetic gene clusters (BGCs) typically involves searching colocalised genes against large genomic databases. How

🚨 Tired of redundant #BiosyntheticGeneCluster hits?

πŸ’₯ Check out #CAGEcleaner – our new genome-level dereplication pipeline for BGC mining and comparative analysis. Works with cblaster & CAGECAT.

Now out in Bioinformatics: bit.ly/3TghJEx
πŸ”— GitHub: bit.ly/44rNZK9
πŸ™Œ Kudos to our PhD student Lucas!

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HiFiBGC: an ensemble approach for improved biosynthetic gene cluster detection in PacBio HiFi-read metagenomes - BMC Genomics Background Microbes produce diverse bioactive natural products with applications in fields such as medicine and agriculture. In their genomes, these natural products are encoded by physically clustere...

HiFiBGC: an ensemble approach for improved biosynthetic gene cluster detection in PacBio HiFi-read metagenomes. #BiosyntheticGeneCluster #Metagenomes #HiFi @pacbio.bsky.social #BMCgenomics 🧬 πŸ–₯️
bmcgenomics.biomedcentral.com/articles/10....

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