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✨Snippets from a PhD ✨

#289/? : Google Scholar
📸 5 December 2025 14:23:23
#phdlife #sgsah #universityofedinburgh #eca #research #academia #literaturesearch

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Literature Search Course: Mastering Research Skills Take your literature search skills to the next level with our comprehensive course. Learn effective strategies and techniques for finding the information you need.

🚀 Master the art of literature searching in our 8-module English course!

Literature Search Course

Learn Boolean ops, database nav (PubMed, Scopus+), PRISMA, & ref mgmt.

Perfect for students, researchers, pros.

Enroll now! 📚🔍

fadic.net/courses/lite...

#LiteratureSearch #ResearchSkills

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Literature Research Databases | The best research database literature search databases, Web of Science, Scopus, Google Scholar, PubMed are good databases to start any research and literature review.

🧑‍🔬 Top Literature Search Databases You Must Know!

1️⃣ Web of Science
2️⃣ Google Scholar
3️⃣ Scopus
4️⃣ PubMed
5️⃣ ScienceDirect
6️⃣ Directory of Open Access Journals (DOAJ)

Explore more from FADIC:
🔗 fadic.net/literature-search-databases

#Research #LiteratureSearch #Databases #FADIC #Science #Publications

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Synthesizing scientific literature with retrieval-augmented language models - Nature A specialized, open-source, retrieval-augmented language model is introduced for answering scientific queries and synthesizing literature, the responses of which are shown to be preferred by human eva...

OpenScholar is a specialized retrieval-augmented language model that answers scientific queries by identifying relevant passages from 45 million open-access papers. It promises to not making up or ‘hallucinating’ citations.

#AcademicResearch #LiteratureSearch #AI

doi.org/10.1038/s415...

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Your research focus is personal.
Your updates should be too.

ChemStream lets you choose the journals you care about and builds a feed around what actually matters — no noise, no overload.

Stay updated on your terms.
www.chemstream.app

#chemistry #chemistryresearch #literaturesearch

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Literature Research Databases | The best research database literature search databases, Web of Science, Scopus, Google Scholar, PubMed are good databases to start any research and literature review.

🧑‍🔬 Top Literature Search Databases You Must Know!

1️⃣ Web of Science
2️⃣ Google Scholar
3️⃣ Scopus
4️⃣ PubMed
5️⃣ ScienceDirect
6️⃣ Directory of Open Access Journals (DOAJ)

Explore more from FADIC:
🔗 fadic.net/literature-search-databases

#Research #LiteratureSearch #Databases #FADIC #Science #Publications

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Looking for evidence for patient care, research or guidelines/policy update? Get in touch with your local library to ask about a literature search! #evidencebasedmedicine #libraries #literaturesearch

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Looking for evidence for patient care, research or guidelines/policy update? Get in touch with your local library to ask about a literature search! #research #literaturesearch #libraries

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MSK Library Blog:

library.mskcc.org/blog/2025/07...

#AskALibrarian #LibraryExperts #KnowTheLimitations
#HumanTouchMatters #MedicalResearch
#ResearchSupport #LiteratureSearch #BeyondTheBot

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Text Shot: Today anyone can access FutureHouse’s agents at platform.futurehouse.org. The company’s platform launch generated excitement in the industry, and stories have started to come in about scientists using the agents to accelerate research.

One of FutureHouse’s scientists used the agents to identify a gene that could be associated with polycystic ovary syndrome and come up with a new treatment hypothesis for the disease. Another researcher at the Lawrence Berkeley National Laboratory used Crow to create an AI assistant capable of searching the PubMed research database for information related to Alzheimer’s disease.

Scientists at another research institution have used the agents to conduct systematic reviews of genes relevant to Parkinson’s disease, finding FutureHouse’s agents performed better than general agents.

Text Shot: Today anyone can access FutureHouse’s agents at platform.futurehouse.org. The company’s platform launch generated excitement in the industry, and stories have started to come in about scientists using the agents to accelerate research. One of FutureHouse’s scientists used the agents to identify a gene that could be associated with polycystic ovary syndrome and come up with a new treatment hypothesis for the disease. Another researcher at the Lawrence Berkeley National Laboratory used Crow to create an AI assistant capable of searching the PubMed research database for information related to Alzheimer’s disease. Scientists at another research institution have used the agents to conduct systematic reviews of genes relevant to Parkinson’s disease, finding FutureHouse’s agents performed better than general agents.

Accelerating scientific discovery with AI news.mit.edu/2025/futurehouse-acceler... #AI #science #LiteratureSearch #agents

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LitSense 2.0: AI-powered biomedical information retrieval with sentence and passage level knowledge discovery Abstract. LitSense 2.0 (https://www.ncbi.nlm.nih.gov/research/litsense2/) is an advanced biomedical search system enhanced with dense vector semantic retri

LitSense 2.0: AI-powered biomedical information retrieval with sentence and passage level knowledge discovery. #LiteratureSearch #BiomedicalInformation #AIsearch @narjournal.bsky.social‬ 🧬 🖥️
academic.oup.com/nar/advance-...

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Europe PMC - Quick tour Europe PMC - Quick tour

New to #EuropePMC or want to get more from your literature searches? 🤔

Our Quick Tour is your shortcut to smarter searching!🔎
🧬 Find papers, preprints, data and more in just minutes.
Start exploring: www.ebi.ac.uk/training/onl...

#PhDSky #AcademicSky #AcademicChatter #LiteratureSearch #ECRchat

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Making sense of Europe PMC: Answers to your biggest FAQs – Europe PMC News Blog

Ever wondered how #EuropePMC actually works? 🤔

We’ve rounded up the most common questions, like where content comes from, and answered them all in one place.

Your top FAQs answered in our latest blog post: bit.ly/3ZgXdqC

#PhDSky #AcademicSky #SysReview #LiteratureSearch #Medlib

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We've set up a new display at our North Manchester Library to help MFT staff with their studies.

We also offer training on #literaturesearch, #criticalappraisal and #systematicreview for MFT Staff too!

#librarysky #nhslibrary

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Searching and Evaluating Publications and Preprints Using Europe PMC In the field of life sciences there is a growing need for literature analysis tools that help scientists tackle information overload. Europe PubMed Central (Europe PMC), a partner of PubMed Central…

🔍 Have you tried using #EuropePMC for your #LiteratureSearch? It offers powerful tools to help you find:

▶️ Articles & preprints
▶️ Methodology details
▶️ Biological interactions
▶️ Links to data & more!

Read our publication to perform more efficient and effective searches: buff.ly/7JgMnYZ

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Learn strategies to analyze research papers effectively for literature review synthesis.
zurl.co/gng3o
zurl.co/2nuv9
#LiteratureReview #ResearchAnalysis #AcademicWriting #ResearchPapers #LiteratureSearch #ResearchMethods #AcademicResearch #DataAnalysis

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Have questions about the Europe PMC developer resources?

Join our developer forum to:
🔹 Get help from Europe PMC developers
🔹 Share your experiences and tips
🔹 Stay informed about API updates

Join the community: groups.google.com/a/ebi.ac.uk/...
#DeveloperTools #OpenSource #API #LiteratureSearch

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Screenshot of Developer resources in Europe PMC. Use Europe PMC's Open Access content and metadata to build your applications. Articles RESTful API - Access publications and related information. Grants RESTful API - Access grant information from Europe PMC funders using the GRIST database. API case studies - Learn more about how Europe PMC APIs can be used to create new products and services. SOAP web service - Retrieve publication data using this Simple Object Access Protocol (SOAP)-based service. OAI service - Get access to the metadata of all items in the Europe PMC archive, and full text of a subset of these items. Bulk downloads - Download all the articles in the Open Access set, plus the metadata of all full-text articles in Europe PMC. Annotations API - Access annotations contained in abstracts and open access articles. Developer Forum - Join the developer forum to receive news about API releases, post general API questions, and share your experience with fellow API users. Tech Blog - Follow the Europe PMC Tech blog to learn about Europe PMC technical developments, API case studies and more.

Screenshot of Developer resources in Europe PMC. Use Europe PMC's Open Access content and metadata to build your applications. Articles RESTful API - Access publications and related information. Grants RESTful API - Access grant information from Europe PMC funders using the GRIST database. API case studies - Learn more about how Europe PMC APIs can be used to create new products and services. SOAP web service - Retrieve publication data using this Simple Object Access Protocol (SOAP)-based service. OAI service - Get access to the metadata of all items in the Europe PMC archive, and full text of a subset of these items. Bulk downloads - Download all the articles in the Open Access set, plus the metadata of all full-text articles in Europe PMC. Annotations API - Access annotations contained in abstracts and open access articles. Developer Forum - Join the developer forum to receive news about API releases, post general API questions, and share your experience with fellow API users. Tech Blog - Follow the Europe PMC Tech blog to learn about Europe PMC technical developments, API case studies and more.

Did you know Europe PMC offers powerful developer tools?

🔹 Articles API
🔹 Annotations API
🔹 Grants API
🔹 Bulk downloads
🔹 SOAP web service
🔹 OAI service And more!!

Find out more and access developer tools: europepmc.org/developers
#DeveloperTools #OpenSource #API #LiteratureSearch

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9/ Recommended by researchers

“The great interface, the comprehensive database, ease of use, the powerful API that enables also text mining and, and incorporation of this database into other resources.” Dr. Chrisophe Dessimoz, University College London
#EuropePMC #LiteratureSearch #AcademicSky

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8/ Designed to meet your needs
Europe PMC is built with you in mind!

“ Very innovative, and introduced user-centric features and its another important tool to our day-to-day toolbox.” Dr. Chrisophe Dessimoz, University College London
#LiteratureSearch #AcademicChatter #AcademicSky #ECRchat

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7/ Helpdesk

"It's very helpful to have a helpdesk that I can contact and a human will get back to me. You often have very specific queries, and it's otherwise almost impossible to find out how to do them.” Aoife McMahon, EMBL-EBI

Contact us helpdesk@europepmc.org
#LiteratureSearch #AcademicSky

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4/ Find the details
Europe PMC’s full text search helps you uncover details beyond abstracts, saving you time in finding the specifics!

“I can use search through the full text and I can find mentions of the methodology.” Aoife McMahon, EMBL-EBI
#LiteratureSearch #AcademicSky #ECRchat

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3/ One search
Search peer-reviewed publications and preprints in one place on Europe PMC

“To be able to search both the published literature and preprints with the same search terms in one go, that's a real advantage.” Frank Uhlmann, Francis Crick Institute
#LiteratureSearch #AcademicSky #ECRchat

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2/ Control over search
Europe PMC lets you search the way you want - filter by full text, preprints, data links and more to find everything relevant to your research.

"This is how literature search should be." Frank Uhlmann, Francis Crick Institute
#LiteratureSearch #AcademicSky #ECRchat

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Five stories showing how Europe PMC is used by the life sciences community
Five stories showing how Europe PMC is used by the life sciences community YouTube video by EuropePMC

1/ 🔍 Why do researchers use Europe PMC?

Europe PMC is a powerful literature discovery tool, that helps you access global life science outputs

📽️ Hear from researchers themselves: www.youtube.com/watch?v=L9Xz...

Or check out the key takeaways below ⬇️
#LiteratureSearch #AcademicSky #ECRchat

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👏 Shoutout to SciX Ambassadors Yueyi Che & Tom Chaffee! As part of Love Data Week, they’re leading a hands-on workshop tomorrow at Stanford on how SciX accelerates research in Earth & space sciences!
s.si.edu/4aVtbgC

📚 #SciX #LoveDataWeek #OpenScience #LiteratureSearch

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Text Shot: In case you missed it in favor of the Grammy Awards last night, OpenAI surprised the world late Sunday evening with the announcement of its new “Deep Research” modality, an AI agent available to ChatGPT Pro subscription plan ($200/month) users that’s designed to save humans hours by researching, well, “deeply” and expansively across the web for given topics and compiling professional quality reports across specialized domains from business to science, medicine, marketing and more.

Users of ChatGPT Pro (and soon, ChatGPT Plus, Team, Enterprise and Edu) in the U.S. will be able to access Deep Research by clicking on the option underneath the prompt entry/compose bar at the bottom of the ChatGPT website and apps.

Text Shot: In case you missed it in favor of the Grammy Awards last night, OpenAI surprised the world late Sunday evening with the announcement of its new “Deep Research” modality, an AI agent available to ChatGPT Pro subscription plan ($200/month) users that’s designed to save humans hours by researching, well, “deeply” and expansively across the web for given topics and compiling professional quality reports across specialized domains from business to science, medicine, marketing and more. Users of ChatGPT Pro (and soon, ChatGPT Plus, Team, Enterprise and Edu) in the U.S. will be able to access Deep Research by clicking on the option underneath the prompt entry/compose bar at the bottom of the ChatGPT website and apps.

OpenAI’s surprise new o3-powered ‘Deep Research’ mode shows the power of the AI agent era venturebeat.com/ai/openais-surprise-new-... #AI #LiteratureSearch

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1/ 🌟 Europe PMC is a global open life science database available to anyone, anywhere for free!

But how exactly do we support the Open Access community? 🧵👇
#OpenAccess #LiteratureSearch #OpenScience

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Screenshot of Zotero Forum user question by jrboehnke:

Title: Bulk upload of references via Magic Wand + DOIs

I need to read about 50k references into Zotero.

Given that I need to get those references from Scopus, there is no way for me to get these in one go as a .RIS or other sensible file (batches of only 2000 are possible). To circumvent this problem, I wanted to use the Magic Wand read-in of DOIs (I can get those in .csv format at least in chunks of 20k entries out of the database).

Copy-pasting them into the magic wand tool ended with only some of the references being converted into Zotero entries and no way to tell, which ones were missing.

Checking in small batches showed that this is not an issue with the DOIs, they are recognised fine.

After some trial and error, it seems that about 200 DOIs are consistently translated into Zotero entries.

Is there a way to prepare, read-in, provide... the DOIs in a different format or way so that the Magic Wand works?

Screenshot of Zotero Forum user question by jrboehnke: Title: Bulk upload of references via Magic Wand + DOIs I need to read about 50k references into Zotero. Given that I need to get those references from Scopus, there is no way for me to get these in one go as a .RIS or other sensible file (batches of only 2000 are possible). To circumvent this problem, I wanted to use the Magic Wand read-in of DOIs (I can get those in .csv format at least in chunks of 20k entries out of the database). Copy-pasting them into the magic wand tool ended with only some of the references being converted into Zotero entries and no way to tell, which ones were missing. Checking in small batches showed that this is not an issue with the DOIs, they are recognised fine. After some trial and error, it seems that about 200 DOIs are consistently translated into Zotero entries. Is there a way to prepare, read-in, provide... the DOIs in a different format or way so that the Magic Wand works?

Any thoughts much appreciated.
Feel free to post here or at #Zotero!

#SysReview #LiteratureSearch #Scopus

forums.zotero.org/discussion/1...

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