Aaand, we create a template for a research software management plan by @saranjeet : w3id.org/np/RA8YoWqMb6R1HFtFDl3Sr...
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Hashtag
#nanopub
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We have a new approved user: w3id.org/np/RAA8xpaUWhoG8lpPWV9wR...
And the two of us declared our participation, e.g. w3id.org/np/RAb96gThCtIh4xcsVvydP...
Now, up to creating some 101 material for #nanopub !
#OSR26UK
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2 of 3 continuous integration workflows are working
2/3 accomplished ✅
Now, for a release a dependency has to be released with my two fixes, which have already been merged. Then, the world will see a new #nanopub application.
A #SnakemakeHackathon2026 result.
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I learn, that I am the first to write a reporter plugin, which is part of the #Snakemake organization.
That will change. @fbartusch is working on an #ROCrate plugin. Yours truly is working on a #nanopub plugin. Both will ease publishing workflow analysis metadata and making our computing a bit […]
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Finally, some personal progress: Thanks to @fbartusch a bug of the #SLURM executor plugin for Snakemake was fixed (dealing with nested quoting). A release is upcoming.
And: I generated my first (still faulty) test #nanopub from Snakemake 🥳
#SnakemakeHackathon2026
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An example (dummy) knowledge graph describing a) a Snakemake workflow b) an example data set and c) an example analysis report for this workflow
What do you see here? This is an example knowledge graph describing a #Snakemake analysis workflow. You see the workflow description, a linked data set and a linked report.
All work done to boost #HPC user support for those conducting their workflows on HPC […]
[Original post on fediscience.org]
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Most active nanopub users this month. My name is last on the list.
My first time ever on this list 😉 . While I don't like gamification, it is certainly something I couldn't miss today when cleaning tabs.
#nanopub #gamification
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I share this sentiment @nanopub
w3id.org/np/RAiFdv4D_zW85xY3e00Xa...
Just, I don't think replying with another #nanopub is the way to go in a discussion. Right? And then: perhaps it is a good idea for space No.27 to work on an action plan? 😉
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> Your abstract 'Live Demo: From Snakemake Run to Scholarly Record - Automatic Nanopublications & Workflow Run RO‑Crate Generation' has been successfully submitted. It is registered with the number #150. You will be notified by email with the submission details.
I have quite some work to do […]
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Where will I be in early March 2026?
In Stuttgart! At the deRSE conference. I intend to submit a couple of work items dealing with my favourite workflow management system. And the call for contributions is open: https://mastodon.social/@de_rse/115270954346336457
To give you an idea of what I […]
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nanopub publication create on the command line using a schema json as input
Intermediate result:
#NESColLab #hackathon #nanopub
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Oh! Here at the #isc25 I noticed, I got my first #nanopub PR merged: https://github.com/Nanopublication/nanopub-py/pull/193 🥳
#ReproducibleResearch
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A simple graph connecting nanopub IDs to a keyword. Here, the keyword is "Covid".
Hooray! I produced my first dummy knowledge graph using #nanopub s and the Python API!
There is a lot more to explore. But this concludes my RSE day. Time for family, a shower and a podcast!
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