We created bigger & smaller pangenome graphs (1, 3, 6 and 121 genomes) using our tool Panalyze (github.com/downingtim/P...) which is essentially a wrapper for #PGGB, #OGDI, #Bandage and related tools.
This meant we could analyse different PVGs quickly.
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4/6 We constructed a pangenome graph with #pggb
@erikg.bsky.social to crawl along the regions of the genomes where NLRs or pieces of NLRs are found at least in 1 accession UNTIL we found common (syntenic) anchors bordering those regions in all the accessions --> "NLR neighborhood"