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#
Hashtag
#plumed
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code snippet for a PLUMED input reading
```
histo: METATOMIC ...
    MODEL=histo-cv.pt
    EXTENSIONS_DIRECTORY=./extensions/
    SPECIES1=1-38
    SPECIES_TO_TYPES=18
...

cv1: SELECT_COMPONENTS ARG=histo COMPONENTS=1
cv2: SELECT_COMPONENTS ARG=histo COMPONENTS=2
```

code snippet for a PLUMED input reading ``` histo: METATOMIC ... MODEL=histo-cv.pt EXTENSIONS_DIRECTORY=./extensions/ SPECIES1=1-38 SPECIES_TO_TYPES=18 ... cv1: SELECT_COMPONENTS ARG=histo COMPONENTS=1 cv2: SELECT_COMPONENTS ARG=histo COMPONENTS=2 ```

Basically, you just need to define a `torch.nn.module` with a specific API, and then you can define anything you like as a CV calculator. Export as .pt torchscript model, and it's just on METATOMIC action away from reading it in #plumed

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snapshot of a trajectory of a Ar38 cluster undergoing a transition from the fcc to the icosahedral minima

snapshot of a trajectory of a Ar38 cluster undergoing a transition from the fcc to the icosahedral minima

New ๐Ÿง‘โ€๐Ÿณ๐Ÿ“– #recipe landed, doubling up as a @plumed.org tutorial ๐Ÿฆ atomistic-cookbook.org/examples/met..., and explaining how to use the #metatomic interface in #plumed to define custom collective variables with all the flexibility and speed of torch.

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The bard sings his song
A #plumed feather in his hat
they stop and listen

#whistpr #haiku #poetry #writing #writingcommunity

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Our effort to collect and organize #plumed tutorials has been published in the Journal of Chemical Physics, as part of the Michele Parrinello Festschrift!

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Preview
PLUMED Tutorials: A collaborative, community-driven learning ecosystem In computational physics, chemistry, and biology, the implementation of new techniques in shared and open-source software lowers barriers to entry and promotes

The paper describing our community effort to collect and organize #plumed tutorials has been published in the Journal of Chemical Physics, as part of the Michele Parrinello Festschrift! doi.org/10.1063/5.02...

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Preview
PLUMED Tutorials: a collaborative, community-driven learning ecosystem In computational physics, chemistry, and biology, the implementation of new techniques in a shared and open source software lowers barriers to entry and promotes rapid scientific progress. However, ef...

๐Ÿ“ข New #preprint describing our community effort to share #plumed tutorials arxiv.org/abs/2412.03595 ! Explore the tutorials at www.plumed-tutorials.org

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