BaGPipe: an automated, reproducible, and flexible pipeline for bacterial genome-wide association studies Microbial genome-wide association study (GWAS) tools often require manual data processing steps, lack comprehensive workflows, and are limited by scalability issues, thus hindering the exploration of ...

Tired of fragmented bacterial GWAS workflows? Try BaGPipe (Bacterial GWAS Pipeline)—a fully automated, flexible Nextflow pipeline integrating Pyseer for streamlined association studies. Reproducible. Scalable. Efficient. doi.org/10.1101/2025...
#Nextflow #BacterialGWAS #AMR #Bioinformatics

Hello world! After a year in the making, the Pathogen Dynamics Unit is ready to launch! Check out our website (pdu.gen.cam.ac.uk) and follow the team (bsky.app/profile/did:...) to keep up with the latest from our infectious disease supergroup based at @geneticscam.bsky.social