Nature research paper: Language models transmit behavioural traits through hidden signals in data
go.nature.com/42bl0t6
Posts by Luis Ramirez
🔈Paper out! We turned the most fascinating phage host-switch mechanism, diversity-generating retroelements, into a programmable mutagenesis tool, DGRec. You can perform targeted hypermutation of any 50-200bp sequence directly in vivo in E. coli www.nature.com/articles/s41...
Dissecting the genetic determinants of bacterial DNA degradation by bacteriophage T5 www.biorxiv.org/content/10.64898/2026.04...
Phage receptor prediction from genome sequencing alone. Bacterial receptor (blue) interacting with phage proteins (purple) is shown here
📣Huge preprint 🔔
Today we share something our group has been working toward for a long time, led by @lucasmoriniere.bsky.social We asked can we predict which receptor a phage targets from its genome sequence alone? For most phages, we couldn’t. So Lucas set out to do something I had only dreamed of.
"Several European countries declined the American president's request to help secure shipping in the Strait of Hormuz. Donald Trump alone bears responsibility for this situation, given his policy of fait accompli." www.lemonde.fr/en/opinion/a...
ICYMI: New online! Human herpesvirus evasion of humoral immunity and implications for vaccine development
Bacteriophage host prediction using a genome language model www.biorxiv.org/content/10.64898/2026.03...
🔓Check out this #OpenAccess research by Matthias Schild & Dennis Gillingham @unibas.ch in our latest issue exploiting intracellular oncogenic proteins for the intracellular delivery and release of cytotoxins #medchem🧪
Read it in full on our website🔽
A proof-of-concept trial in a single patient has shown that genetically engineered pancreas cells can survive transplantation without immunosuppression.
#chemsky 🧪
Sassy2: Batch Searching of Short DNA Patterns www.biorxiv.org/content/10.64898/2026.03...
Rhythmic tunes trigger synchronized eyeblinks and automatic bopping or swaying, new research suggests
Very interesting commentary:
"There is currently no verified scientific evidence to support the lab leak hypothesis (of the SARS-CoV2)" journals.asm.org/doi/10.1128/...
"During the reporting period, we (Bluesky) removed 3619 accounts for involvement in suspected influence operations. Most of these accounts were assessed as linked to foreign state-aligned actors, including actors likely operating from Russia ..." #foreigninterference
Why government funding of basic research is essential to scientific progress🧪:
www.americanscientist.org/article/%E2%...
What will happen when “AI” reviewers meet “AI” editors? There must be publishers already doing this…
🧪
Shein : 25 % des colis hors textiles jugés non conformes lors d’un contrôle massif à l’aéroport de Roissy, selon les services de douane
Enquête sur l'audiovisuel public en stand-by, hypothèse du 49.3 et municipales en Savoie sont au menu de Playbook Paris, concocté par @anthonylattier.bsky.social.
Really interesting research showing that while ultra-specialization in a single discipline might lead to better results early in one’s career, multi-discipline training and practice pays off big time in the long run. This applies to a range of professions from scientists to athletes and more
This paper highlights regulatory and evidence gaps slowing phage therapy, contrasting Belgium’s personalised approach with US fixed-phage RCTs. Stronger clinical data, better manufacturing capacity, & global coordination are key to moving phage treatments forward. #AMR
www.nature.com/articles/s41...
A recent M.I.T. study found that 95% of companies that had invested in A.I. tools were seeing zero return.
Happy to see this phenomenal review led by Sam Greenrod with @kayla-king.bsky.social finally out in the world!
www.annualreviews.org/content/jour...
Interesting paper on bacteriophage genomics and bioinformatics
'Phage quest: a beginner’s guide to explore viral diversity in the prokaryotic world' by @sebwielgoss.bsky.social and colleagues
academic.oup.com/bib/article/...
Introducing Ada: the new AI training assistant. Explore on-demand bioinformatics training with Ada, your training AI assistant.
Introducing Ada: the new AI assistant from EMBL-EBI Training. We created our training chatbot, Ada, to make it easier and more engaging for users to find the right on-demand training resources from our broad catalogue of training: www.ebi.ac.uk/training/ada
#AdaLovelaceDay #bioinformatics
🧬🖥️
Two intensive sampling periods of oyster-associated vibrio and their phage, 4 years apart, and many surprises. Despite being washed by the Atlantic, wide tides, and vibrio (almost?) disappearing most of the year, we can find the exact same virulent phages 4 years later (down to 0 SNP)! preprint👇