LIBD rstats club Continuous rstats learning

@libdrstats.bsky.social videos and blog posts continue to be a great resource for me as I delve into snRNAseq analyses, and for lots of other bioinformatics-related topics! Learn more here: research.libd.org/rstatsclub/

[2026-02-27] Strategy to drop doublets during snRNAseq QC steps YouTube video by Leonardo Collado Torres

Check out my first @libdrstats.bsky.social presentation on one strategy our team @lcolladotor.bsky.social at @lieberinstitute.bsky.social is taking to deal with doublets during quality control for single nucleus RNA-sequencing data:
www.youtube.com/watch?v=SMA-...

Here’s the original 2005 solo author paper by Philip E. Bourne

journals.plos.org/ploscompbiol...

One thousand simple rules

RIP Philip E. Bourne whom among many things made the “ten simple rules…” PLOS Computational Biology series so successful! @plos.org

journals.plos.org/ploscompbiol...

Thanks to all my @lieberinstitute.bsky.social and external colleagues who helped me with my first 🇺🇸 National Institutes of Health (NIH) R01 grant resubmission ^^ and those who wrote support letters for it

Hopefully it’ll do well on this second round! Fingers crossed 🤞🏽

#ESI

Folks from underrepresented groups in data science and open source: we'd love to have you join!

The future of #DataScience is at #positconf 2026. Check out our keynote lineup:
Wes McKinney: Future of high-performance computing
Christine Zhang: Data storytelling at NY Times
Emily Riederer: Scaling open-source at Capital One
Sara Altman & Simon Couch: AI-driven workflows
Register: pos.it/conf

¡Gracias Sean! Ya lo encontraron sano y a salvo 🙌🏽

¡Gracias Ana! Si, al final fue un buen susto 😨. Pero solo eso. Uff 😥

fue físicamente a esa casa a buscarlo.

En fin, ya pasó el susto y al final de la historia, lo importante es que está bien Julio.

¡Gracias por ayudarme a compartir la info!
Leo

¡Hola!

Ya encontraron a mi primo Julio D. Velázquez Torres. Está sano y a salvo. Si lo asaltaron y le quitaron todas sus pertenencias y dinero. Así que se estaba quedando en casa de un amigo, que tampoco tiene celular. Por eso se quedó incomunicado hasta que su hermana

Apply to be an Opportunity Scholar at posit::conf(2026) in Houston!
We’re offering 40 full-support scholarships for underrepresented groups in data science. Includes: 🎟️ Conference+Workshop pass 🏨 Hotel stay ✈️ Travel reimbursement
Apply by March 13: posit.co/blog/apply-t...
#positconf2026 #rstats

Excellent first post Marina!

Welcome to BlueSky and #RStats + #Bioconductor

#RStatsES 🙌🏽 🇲🇽

Discovered miRBaseConverter (Bioconductor) this week and thought it was cool 🙌

It translates miRNA names across miRBase versions and retrieves sequence info programmatically, making dataset integration smoother.

Already saving me future headaches.
Thanks to Taosheng Xu 👏

Posit::conf(2026) Call for Talks - Posit posit::conf(2026) is coming September 14-16 to Houston, TX, and we're looking for talks!

We spend >1 hr per week officially learning about new tools 🧰 & resources 📜. This keeps us adaptive!

To scale up, we clone ourselves thanks to public YouTube videos which allow us to build customized training lists.

-- o --

See you in September 2026 🤞🏽!

posit.co/blog/posit-c...

learning, and creating open access content I’ve been able to build an adaptive, efficient, and resilient team.

The documentation website provides information about config files, accessing common software on an HPC, templates, and “blog”-level docs that can be updated but are not tested daily.

Abstract (max 750 characters):

-- o --

I’d like to share about how I’ve organized the @lieberinstitute.bsky.social “Data Science team 1” (Translational Neuroscience Division) since I took over its leadership in September 2020. By having a team documentation website, an emphasis on continuous

Talk submission video for Posit Conf 2026 #RStats

«Organizing your data science team to be efficient, adaptive to new developments, and resilient to turnover rate»

URLs:
1. lcolladotor.github.io/bioc_team_ds/
2. research.libd.org/rstatsclub/
3. github.com/LieberInstit...

#OpenSource #Bioconductor

🚨 Último día 🚨
Hoy 20/2 cierra la convocatoria del Programa de Campeon(a|e)s
12 meses de mentoría, formación y comunidad en software científico y ciencia abierta, con foco en América Latina y en español.
⏰ Aplicá hoy 👉 champions-program.ropensci.org
Sumate a la próxima cohorte 💙
#RStats

New postdoctoral opportunity @lieberinstitute.bsky.social working w/ @tsawada1.bsky.social and our Molecular Neurogenetics team using human induced pluripotent stem cells to investigate molecular, cellular and neuroendocrine mechanisms by which impaired placental function impacts brain development

Hehehe :) I’m glad that you liked it ^^. Though I’m afraid that 300 🧩 pieces won’t last long hehe.

Though you can remake it several times. I’m curious to see 👀 how fast you’ll be able to put it together by memory hehe 🙃

FIRST post here on Bluesky - we’re excited to share that our large spatial transcriptomics study of the human dlPFC in schizophrenia is now available on bioRxiv📄: www.biorxiv.org/content/10.6... (1/9)

Happy new year!! 🧧🎉🎇🌑🐎

If you study microbiome Time series (gut, soil or mangroves -> like me) you want to know this...

#miaTime (new on #Bioconductor3.22) gives you:

🟢 Divergence
🟢 Short-term change
🟢 Bimodality

Thanks to the devs: @antagomir.bsky.social @tuomasborman.bsky.social

#RStats #Microbiome #Bioconductor

Today I had the opportunity to teach as a guest instructor in a bioinformatics course at #LCG-UNAM 👨🏻‍💻.
We built academic websites with #postcards (thanks @seankross.com!), inspired by @hadley.nz and @jtleek.bsky.social.
Thanks to Dr. @lcolladotor.bsky.social for the invitation! 🚀

#RStats

Looking forward to contributing to a course session this week at #LCG-UNAM 👨🏻‍💻
Grateful for the opportunity to learn through teaching! 😊

An illustration of a megaphone with Pride flag colors streaming out of it.

The ASA Pride Scholarship was established to raise awareness and support the success of LGBTQ+ statisticians and data scientists, as well as allies. Nominate a deserving person by March 1. stattrak.amstat.org/...

RDM Weekly - Issue 031 A weekly roundup of Research Data Management resources.

Issue 31 of RDM Weekly is out! 📬

➡️ OS resources in Comm Sciences @csdisseminate.bsky.social
➡️ RDA 25th Plenary Meeting Programme @researchdataall.bsky.social
➡️ Ask for R Help by Creating a Small Reproducible Example @libdrstats.bsky.social
and more!

rdmweekly.substack.com/p/rdm-weekly...

@lieberinstitute.bsky.social @jhubiostat.bsky.social

lcolladotor.github.io/rnaseq_LCG-U... is looking ready for next week!

We'll have the most guest presenters ever this year with @meli-mq99.bsky.social @gabrielramirezv.bsky.social @mariagtac.bsky.social & @daiannaglez.bsky.social 🙌🏽

See you soon at LCG-UNAM! 🇲🇽

#RStats @bioconductor.bsky.social