DeeDeeExperiment: Building an infrastructure for integrating and managing omics data analysis results in R/Bioconductor AbstractSummary. Modern omics experiments now involve multiple conditions and complex designs, producing an increasingly large set of differential expressi

From @guigadraws.bsky.social & colleagues in #OUP 's #Bioinformatics journal | DeeDeeExperiment: Building an infrastructure for integrating and managing omics data analysis results in R/Bioconductor | #RStats #Bioconductor #Bioinformatics #OpenScience | 🧬 🖥️ 🧪🔓
⬇️
academic.oup.com/bioinformati...

A scenic mountain landscape with steep rocky peaks and green forested slopes under a partly cloudy sky. Overlaid text reads: “CSAMA 2026 – Biological Data Science, 22nd Edition, Bressanone-Brixen, Italy, 24–29 May 2026.”

📢 CSAMA 2026: Biological Data Science Summer School registrations are open for its 22nd edition, taking place in:

📍 Bressanone–Brixen, Italy
🗓 24–29 May 2026

🔗 Learn more and register: csama2026.bioconductor.eu

#CSAMA2026 #Bioconductor

Excellent first post Marina!

Welcome to BlueSky and #RStats + #Bioconductor

#RStatsES 🙌🏽 🇲🇽

Talk submission video for Posit Conf 2026 #RStats

«Organizing your data science team to be efficient, adaptive to new developments, and resilient to turnover rate»

URLs:
1. lcolladotor.github.io/bioc_team_ds/
2. research.libd.org/rstatsclub/
3. github.com/LieberInstit...

#OpenSource #Bioconductor

Curious about multi-omics integration? 👀🧬
Try iModMix to build partial-correlation networks and link modules across omics 🔗✨
Annotation-agnostic and discovery-driven 🚀
Thanks Isis Narvaez Bandera 💻
#Bioconductor #multiomics

Comic-style illustration promoting the BioC2026 Sticker Contest. The panels show a stick-figure character reading a sign announcing the contest, thinking of ideas inspired by Seattle (including the Space Needle, Mount Rainier, DNA, molecular structures, and evergreen trees), sketching a hex sticker design, placing the finished design into an envelope, and submitting it. The final panel reads “Submit by February 20, 2026” alongside a Seattle-themed hex sticker design.

🎨 Reminder: One week left to submit your sticker design! 🎨

The BioC2026 Sticker Design Contest is still open, but the deadline is fast approaching.

🗓 Deadline: February 20, 2026
👉 Submit your design here:
docs.google.com/forms/d/e/1F...

#BioC2026 #Bioconductor

This week we had @lcolladotor.bsky.social as our professor, and we talked about new packages in #Bioconductor.

One that really caught my attention was cellmig 🧬. It uses hierarchical Bayesian models to study cell migration.

Check it out!! bioconductor.org/packages/rel...

Thanks Simo Kitanovski

Curious about drug discovery or pharmacogenomics? You need to see this...

#DeepTarget (new on #Bioconductor3.22) helps you:

💡 Predict targets
⚡ Rank hits
🧪 Cut lab tests

Thanks to: Sanju Sinha, Trinh Nguyen & Ying Hu

@bioconductor.bsky.social

#Bioconductor #DrugDiscovery #Pharmacogenomics

If you study microbiome Time series (gut, soil or mangroves -> like me) you want to know this...

#miaTime (new on #Bioconductor3.22) gives you:

🟢 Divergence
🟢 Short-term change
🟢 Bimodality

Thanks to the devs: @antagomir.bsky.social @tuomasborman.bsky.social

#RStats #Microbiome #Bioconductor

Poster announcing the BioC2026 Call for Abstracts. At the top is the Bioconductor logo and the text “BioC2026” followed by large text reading “CALL FOR ABSTRACTS.” A section titled “Submission Types” lists workshops, posters, package demos, and short talks, each with an icon and brief description. An “Important Dates” timeline shows: abstract submissions begin on 1 February 2026, abstracts deadline on 13 March 2026, decisions sent out on 1 April 2026, registration closes on 27 July 2026, and conference dates from 10–12 August 2026. At the bottom is a QR code labeled “Submission link” and text with the website bioc2026.bioconductor.org and location Seattle, WA, Fred Hutchinson Cancer Center.

📣 Abstract submissions for BioC2026 are open!
We invite you to submit workshops, posters, package demos, and short talks.

⏰ Deadline: 13 March 2026
📍 Event: 10–12 August 2026, Seattle, WA

👉 Submit: openreview.net/group?id=bio...

🔗 More info: bioc2026.bioconductor.org
#BioC2026 #Bioconductor

Promotional graphic announcing the EuroBioC2026 Call for Abstracts. The image includes the Bioconductor logo, text reading “EuroBioC2026, 3–5 June 2026, Turku, Finland,” and a large “Call for Abstracts” headline. A red banner across the image states “Deadline Extended”

📢 Deadline Extended: EuroBioC2026 Call for Abstracts

Great news! The submission deadline for EuroBioC2026 has been extended to February 13, 2026, to allow more time for submissions.

👉 Submit your abstract here: openreview.net/group?id=bio...

#EuroBioC2026 #Bioconductor

Poster announcing the EuroBioC2026 Sticker Contest. At the top is the Bioconductor logo with the text “EuroBioC2026.” Large bold text reads “STICKER CONTEST.” Below, a boxed section titled “Contest Guidelines” lists: 1) Design your hex sticker, 2) The design should be inspired by Turku, Finland, home of EuroBioC2026, and 3) Submit by deadline. At the bottom, text reads “Submit by January 31, 2026.” The background features hexagonal patterns, dots, and paint-splash graphics in green and blue tones.

🎨 Reminder: Only a few days left to submit your sticker design! 🎨

The EuroBioC2026 sticker design contest is open until January 31st, 2026.

👉 Submit your design here: docs.google.com/forms/d/e/1F...

🔗 Learn more: eurobioc2026.bioconductor.org

#EuroBioC2026 #Bioconductor

Graphic announcing the EuroBioC2026 Call for Abstracts. The event will take place 3–5 June 2026 in Turku, Finland. Submission types include workshops (1.5-hour hands-on interactive sessions on software or workflows), posters (printed A0 portrait posters), and short talks (10-minute talks on a package, research, or technical question). Abstracts were originally due by 30 January 2026. A QR code is included for submissions, along with Bioconductor branding and decorative shapes.

⏰ Last Reminder: EuroBioC2026 Call for Abstracts

The deadline is fast approaching! Submissions are still open for short talks, posters, and workshops at EuroBioC2026.

🗓 Submission deadline: 30 January 2026

👉 Submit your abstract: openreview.net/group?id=bio...
#EuroBioC2026 #Bioconductor

Exploring and Analyzing LC-MS Data This resource hosts tutorials and end-to-end workflows describing how to analyze LC-MS/MS data, from raw files to annotation, using Bioconductor packages.

🚀 New release: Metabonaut v1.4.0 is here!

1️⃣ New integration with the notame package for robust feature selection. 2️⃣ Added GNPS2 FBMN export for molecular networking.

Explore the updates: rformassspectrometry.github.io/Metabonaut/

#Metabolomics #RStats #OpenScience #MassSpec #Bioconductor

European Bioconductor Conference 2026 – EuroBioC2026 The European Bioconductor Conference (EuroBioC2026) will take place on June 3rd to 5th, 2026, in Turku, Finland EuroBioC2026 will bring together the Bioconductor community to showcase the latest cutti...

#EuroBioC2026 (i.e. The European #Bioconductor Conference) will take place, in Turku, Finland, on June 3-5, 2026. For more info see eurobioc2026.bioconductor.org. #Bioinformatics #Rprogramming

You’ll help build interoperable, FAIR tools across @scverse.bsky.social and @bioconductor.bsky.social ecosystems. You will work together with a cross-institute team composed of @lucamarconato.bsky.social, @arturmansl.bsky.social and many contributors from #scverse and #Bioconductor!

⏰Reminder: EuroBioC2026 Call for Abstracts

Submissions are open for short talks, posters, and workshops. We encourage you to share your work at EuroBioC2026.

🗓 Deadline: 30 January 2026

👉 Submit your abstract: openreview.net/group?id=bio...

#EuroBioC2026 #Bioconductor #Bioinformatics

Orchestrating Spatial Transcriptomics Analysis with Bioconductor Spatial transcriptomics technologies provide spatially-resolved measurements of gene expression through assays that can either target selected genes or capture transcriptome-wide expression profiles. ...

From @helucro.bsky.social & colleagues in @biorxivpreprint.bsky.social | Orchestrating Spatial #Transcriptomics Analysis with #Bioconductor | 🧬 🖥️ 🧪 🔓 #RStats #DataViz #Bioinformatics #Genomics #Education #Research #OpenScience #OpenSource
⬇️
www.biorxiv.org/content/10.1...

🔥 Epigenomics Data Analysis – Online Course
📅 13–17 April 2026

Join us and learn more about RNA-seq, ATAC-seq, ChIP-seq, MNase-seq & Hi-C, from raw reads to multi-omics insights, in one hands-on week.

www.physalia-courses.org/courses-work...

#Epigenomics #Bioinformatics #Genomics #Bioconductor

Over a year with the Bioconductor Community (BugSigDB) HOW MY JOURNEY TO THE COMMUNITY BEGAN: My Journey began when i was fresh out of school as a biochemistry graduate as someone who had completed several internships in the field but still was not con…

I finally wrote about my experience contributing to Bioconductor and BugSigDB over the past year. If you’re interested in joining an open-source science community, this blog is a great place to start.

tosinadeshile.wordpress.com/2025/11/26/o...

#opensource #outreachy #bugsigdb #bioconductor

We’re live at GBioS, University of Abomey-Calavi in Benin! 5 days of learning, coding & collaboration began yesterday at #BiocInBenin.

C’est parti! Une semaine d’apprentissage et de collaboration a commencé à GBioS hier.

#Bioconductor #RNASeq #BiocInBenin

Fantastic energy this week in our #Metabolomics in R/Bioconductor course! Big thanks to Pietro Franceschi and our wonderfully international group of attendees.

#Rstats #Bioconductor #Metabolomics

After a week on stats and #Bioconductor intro, today we started #RNAseq analysis with R/Bioconductor! We have covered RNA-seq data characteristics and how to store/analyse it using #SummarizedExperiment.

Orchestrating Microbiome Analysis with Bioconductor The expansion of microbiome research has led to the accumulation of interlinked datasets encompassing versatile taxonomic and functional assays. The analysis of increasingly large and heterogeneous…

Orchestrating Microbiome Analysis with Bioconductor. #Microbiome #DataAnalysis #Bioconductor @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...

#r2u for #Rstats now also includes #BioConductor on arm64 and not only on standard amd64. Following the upgrade to #BioConductor 3.22 we added this hardware platform.

`zlibbioc` was removed so a few packages we have for amd64 could not be built. Should I backfill it (and them)?

🚀 TaxSEA v1.2 is now live in #Bioconductor release 3.22!
TaxSEA brings enrichment testing to #metagenomics data. Just like GSEA does for transcriptomics making #microbiome & #microbiota results biologically interpretable, fast, and reproducible. We've added new DBs & features in 1.2 👇 🧵

@jeremy-data.bsky.social biology based on #bioconductor (and I’m a BioJava contributor) - also model building in health informatics (I’d use #tidymodels and #vetiver now) vs Python

EuroBioC2025 conference recap – Bioconductor community blog Highlights from the 2025 European Bioconductor Conference in Barcelona

Thank you to all our amazing sponsors, organizers, speakers, and attendees for making #EuroBioC2025 in Barcelona such a success!

Read the full recap blog post here👉 blog.bioconductor.org/posts/2025-1...

And, see you next year at #EuroBioC2026! 🎉

#Bioconductor #Community #Conference

My Attempt To Reproduce Stanford HIVdb Sequence and Mutation Analysis From Scratch | Everyday Is A School Day Ever wondered what M184V, K65R actually mean? I learnt it from rebuilding Stanford's HIV resistance algorithm from scratch to find out. Spoiler: it took tons of code to match their 3-line tool. But th...

Ever wondered what M184V, K65R actually mean? I learnt it from rebuilding Stanford’s HIV resistance algorithm from scratch to find out. Spoiler: it took tons of code to match their 3-line tool. But the lesson was worth it

#idsky #hivsky #bioconductor #rstats #sierrapy #bioinformatics

R/Bioconductor for Mass Spectrometry and Proteomics Dates 17-19 November 2025 To foster international participation, this course will be held online

Are you interested in analysing mass spectrometry-based proteomics data using R and @bioconductor.bsky.social ? 🧬

Join our online course 17–19 Nov, led by @lgatto

www.physalia-courses.org/courses-work...

#RStats #Bioconductor #Proteomics #MassSpectrometry #Bioinformatics