Ancient Metagenomics 4-6 May 2026 To foster international participation, this course will be held online

Interested in #aDNA #Metagenomics?

There are still a few seats available for the course with @oskolkov.bsky.social in May: www.physalia-courses.org/courses-work...

And of course, huge thanks to 𝗦𝗮𝗻𝘇𝗵𝗶𝗺𝗮 𝗚𝗮𝗿𝗺𝗮𝗲𝘃𝗮 and
@sashazhernakova.bsky.social
for their enormous contribution to this review!

We hope it will be a useful resource for researchers in the field :)

#microbiome #virome #infanthealth #metagenomics #phages #microbiota

Profile microbial communities with Novogene's 16S/18S/ITS Amplicon Sequencing. We amplify hypervariable regions to resolve bacteria, archaea & fungi, then analyze diversity, composition & taxonomy in complex samples. #Microbiome #AmpliconSeq #Metagenomics https://tinyurl.com/3ppxdtup

Last chance to apply for this PhD position with is #SoilMicrobiome #SoilHealth #Metagenomics

First preprint from my PhD research under the supervision of Ed Galyov and @milja001.bsky.social
We developed a novel bacterial minicells platform combined with #metagenomics to selectively enrich cognate #phages from complex environmental samples and investigated phage-host interactions #phagesky

Come join us a #bioinformatics / #computationalbiology postdoc to explore the #microbiome using #metaproteomics and #metagenomics

Microbiome Bioinformatician (Postdoc) - Metagenomics and Metaproteomics @RalserLab
Charité Universitätsmedizin Berlin

See the full job description on jobRxiv: https://j

Come join us a #bioinformatics / #computationalbiology postdoc to explore the #microbiome using #metaproteomics and #metagenomics

Microbiome Bioinformatician (Postdoc) - Metagenomics and Metaproteomics @RalserLab
Charité Universitätsmedizin Berlin

See the full job description on jobRxiv: https://j

The ongoing census of microbial life is hampered by disparate sampling across Earth’s habitats, challenges in isolating uncultivated organisms, limited resolution in taxonomic marker gene amplicons and incomplete recovery of metagenome-assembled genomes. Here we quantify discoverable Bacterial and Archaeal diversity in a comprehensive, curated cross-habitat dataset of 92,187 publicly available metagenomes.

Most microbial diversity is still missing from genome catalogues.
A new paper in @natmicrobiol.nature.com analysed 92,187 metagenomes and found that most discoverable bacterial and archaeal lineages sit in unbinned contigs.
📰 buff.ly/Q5XREM7
#Microbiome #Metagenomics
@vishnuprasoodanan.bsky.social

#metagenomics #microbiome #evolution #ecology #phylogenomics

Need to identify viruses in ancient sequenced samples? You may want to try FALCON2 💻🦠🧬👨‍🔬👩‍🔬

doi.org/10.1093/bioi...

github.com/cobilab/FALC...

#bioinformatics #aDNA #viruses #metagenomics

EMOBON microbiomes: 16S & 18S insights across European seas Next Wednesday, the 8th of April, CCMAR Seminar will feature Dr. Andrzej Tkacz who has analysed 420 sediment and water samples from the Mediterranean, Baltic, Arctic, Red, Adriatic and Atlantic (incl....

🌊 Dive into marine microbiomes with Andrzej Tkacz (CCMAR)!

Discover patterns across European seas based on 420 samples 🌍 incl. Ria Formosa

💡 Includes an interactive data tool
📅 April 8 | Hybrid | Free (registration required)
🔗 tinyurl.com/54avxwxv

#MarineScience #Metagenomics #OpenScience

Discover insights from the human gut: Novogene's webinar explores how shotgun & ITS sequencing, metabolomics & single-cell RNA-seq unveil species, metabolites & immune signatures tied to cancer progression. #Microbiome #Metagenomics #CancerResearch https://tinyurl.com/3u9pa453

A new study in press at 𝗡𝗣𝗝 𝗕𝗶𝗼𝗳𝗶𝗹𝗺𝘀 𝗮𝗻𝗱 𝗠𝗶𝗰𝗿𝗼𝗯𝗶𝗼𝗺𝗲𝘀, led by APC Microbiome Ireland, uncovers thousands of previously unknown bacteriophages in food systems from >3,000 metagenomes.

#Microbiome #Phages #Metagenomics #FoodScience
buff.ly/EvthZIO

Genome-centric metagenomics reveals electroactive syntrophs in a conductive particle-dependent consortium from coastal sediments - Nature Communications In this study, the authors provide a genomic blueprint for a conductive particle-dependent environmental consortium from coastal sediments and use long-read metagenomics to show how syntrophic partner...

Genome-centric metagenomics reveals electroactive syntrophs in a conductive particle-dependent consortium from coastal sediments
#microbiology #methane #methanogens #metagenomics #MicroSky
@natcomms.nature.com
doi.org/10.1038/s414...

Capture Everything. Microbiome.

Get accurate multiomic insights from stool with DNA & RNA sample collection and preservation technologies designed to maintain microbial integrity from collection to analysis.

Learn more: https://ow.ly/rxzk50YyNGb

#Microbiome #Metagenomics #RNAseq #Multiomics

Abstract submission for #SPAAM8 is now officially OPEN! 🚀

Don't miss the opportunity to share your work and join us in Stockholm on June 22nd 🇸🇪
Online presentations are also possible! 👩🏻‍💻

Submit your abstract: forms.gle/psw9GS3ZyrLV...

Deadline: May 1st
#aDNA #Metagenomics #seDNA

151 - Deacon part 1 In this Software Deep Dive episode, we talk with Dr. Bede Constantinides (University of Birmingham) about Deacon, a tool for removing host DNA reads from metagenomic datasets. We discuss why host read

Host read removal sounds simple. It's not. 🧫

Ep. 151 of #microbinfie: we talk with @bede.im about Deacon — why alignment-based approaches fall short, the sensitivity/specificity tradeoff, and what it takes to remove host reads at scale. Part 1 of 2.

#metagenomics
on.soundcloud.com/gEm7QyaTauvd...

Metagenomic approaches identify diverse tick-borne viruses in Hulunbuir, Inner Mongolia.
doi.org/10.15212/ZOO...
#TickBorneViruses #Metagenomics #Virology #PathogenDetection

Microbial Ecological Signatures Predict Pathogen Emergence and Multidrug Resistance in Cystic Fibrosis Airways up to a Year in Advance Chronic infections in cystic fibrosis (CF) emerge from gradual ecological transitions in the airway microbiome, yet early predictive markers remain poorly defined. We developed a new autoencoder-based...

Check out our preprint on airway microbiome CF

www.medrxiv.org/content/10.6...

Q: Can we predict clinical outcomes before the clinic?
A: Yes!

🦠 Microbiome predicts Pseudomonas colonisation & AMR early
🦠 Resistance mechanisms mirror those seen in lab!

#Microbiome #CysticFibrosis #Metagenomics

🧠 Big idea: a feedback loop 🔁
More recovered genomes → better databases → better future recovery → more discovery

This could reshape metagenomics workflows:
from “assemble → bin → classify”
to “assemble → explore graph → extract genomes”

#eDNA #metagenomics #Biodiversity #Genomics
6/

🚀 The result?

✔️ Full genomes recovered from water samples without culturing
✔️ Species-level identification
✔️ Hidden diversity uncovered

…including a potentially new diatom lineage

#eDNA #metagenomics #SpeciesDiscovery
4/

NEW PAPER ALERT FROM OUR GROUP! What if you can discover previously hidden microeukaryotic diversity at high taxonomic resolution? OUR LATEST WORK DIVES DEEP INTO eDNA OF EUKARYOTES https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.70128

🚀 New paper alert
🙏 Massive shout-out to everyone involved! New collabs and old ones growing stronger.

🔥 Proud moment for the team
PhD paper by Manon Geerts showcases the innovation of our eDNA research, especially in metagenomics of eukaryotes

#eDNA #metagenomics #MolecularEcologyResources
1/

#metagenomics reveals the functional profiles of #soil microorganisms and nutrient cycling under long-term #grass vegetation cropping

www.sciencedirect.com/science/arti... #OpenAccess #microbiota #MicroSky

Today at #MBTL2026 during Session 13: Computational, Integrative and AI Tools for Meta-Omics

🦠 Riccardo Vanini will talk about the gut microbial proteases in inflammatory bowel disease

🤝 Nicola Segata will give a keynote on human-to-human microbiome transmission

#metagenomics #MicrobiomeToLife

Very excited for this MASSIVE #metagenomics project and can't wait to see everything that will be discovered! #longreads

Bioinformatics seminar this Friday 🧬

Join Sarah Shah (@sagenomicscentre.bsky.social) as she turns 💩 into data… and somehow makes it impressive

🗓 Friday, March 20th
⏰ 1.00pm – 2.00ish

DM for zoom / location details

#Bioinformatics #Metagenomics #Genome #Poo

Metagenomic insights into tick-borne viral diversity in Inner Mongolia reveal potential novel public health threats.
doi.org/10.15212/ZOO...
#Metagenomics #TickBorneViruses #InnerMongolia #Surveillance

💬 "Our aim is to help researchers make the most of real-time #nanopore #sequencing by providing an accessible, flexible, and open-source framework for metagenomic analysis."

Discover how software tool MARTi powers real-time classification and visualisation of #metagenomics. 💻 🧬

👉 buff.ly/iurkZDC

Water mass specific genes dominate the Southern Ocean microbiome - Nature Communications Southern Ocean microbial communities are less well studied. Here, the authors generate a circumpolar-scale gene catalog from 218 metagenomics samples revealing broadscale uniqueness and water-mass–spe...

A new study showcasing how the Southern ocean is filled with novel genetic content that is partially shared with the Arctic but largely endemic.

Thd study also provides the Antarctic circumnavigation metagenomic dataset!

#polar #marinemicrobes #metagenomics

www.nature.com/articles/s41...

A Tale of Two Lenses: #Emergency department indoor - #air hybrid-capture #metagenomics complements #wastewater by adding a human-focused respiratory #virus perspective

A Tale of Two Lenses: #Emergency department indoor - #air hybrid-capture #metagenomics complements #wastewater by adding a human-focused respiratory #virus perspective, etidiohnew.blogspot.com/2026/03/a-ta...