Super excited to be launching two things today: #RustQC 🦀🧬 and rewrites.bio 🚀
I used AI to rewrite 15 RNA-seq QC tools into a single Rust binary (I've never written any Rust). It ended up being over 60x faster. Here's the story 🧵
seqeralabs.github.io/RustQC/
Finally got around to release a tiny pipeline together with Susanne Jodoin: github.com/qbic-pipelin...
It takes VEP-annotated VCFs, filters them, and converts them to MAF format. Tested with @nf-co.re /sarek generated VCF files.
The nf-core hackathon is back! Join us Mon 18th - Wed 20th March 2024 for 3 days of Nextflow and fun!
In 2023 we supported local sites for the first time. With almost 20 volunteers organizing local sites around the world, they were a massive success.
MultiQC v1.19 was just released - just in time for the holidays! 🎁 🎄
This release has a bunch of bug-fixes, with 9 different modules receiving tweaks and improvements 🛠️ The MultiQC core code also got a bit of sprucing up and spring cleaning 🧽🫧
Enjoy!
github.com/ewels/MultiQ...
A new release is out with a few new tools ✨
- 🔀 NGSCheckmate to find sample swaps
- 🧬 Sentieon DNAScope Support
- 📏 CNVKit Genemetrics
- 🔬 BCFTools annotate
Special shout-out to Grant Neilson, Simon Pearce, and Raquel Manzano for their first contributions 😍 and everyone that helped out!
Not enough people know about bioicons.com
Open source vector graphics. Free alternatives to BioRender.
Pipeline release! nf-core/airrflow v3.2.0 - nf-core/airrflow version 3.2.0 "Expecto patronum"!
Please see the changelog: https://github.com/nf-core/airrflow/releases/tag/3.2.0
🎉 Massive shoutout to Seqera Labs for yet another incredible #NextflowSummit! 🙌
🌟 This is truly one of the best hybrid conference experiences. Here’s why:
1/🧵
📺 HQ Dual video: slides + the presenter. Clear visuals are so commonly overlooked with virtual conferences. 👏
Thank you, @lwpembleton.bsky.social 🙌 ! It's been an exciting ride and I learned so much throughout. Also huge shout out to @maxulysse.bsky.social, the father of sarek!
👏 Just caught @rikehanssen.bsky.social awesome talk at #NextflowSummit 2023! 🚀 Exploring nf-core/sarek's journey, evolution, and the exciting progress in optimisation 🧬 #Bioinformatics #Nextflow #Sarek
Just made it here a couple of days ago 🚀 😀
🧬🖥️ The Sarek pipeline from #nfcore deserves a lot more attention.! Input fastq, bams, crams, vcfs - get a full state-of-the-art analysis. Rare to see such well maintained and flexible software in the open domain, please support:
www.biorxiv.org/content/10.1...
The first community Advanced
Nextflow
training sessions come out today! Starting in a few hours, registrations here: nf-co.re/events/2023...
Huge thanks to the
@nf-co.re team. See you there!