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Posts by Ilyas Alav

Applications are officially OPEN for the 2027 Gordon Research Conference on Multidrug Efflux Systems.

📅 When: March 21–26, 2027
📍 Where: Ventura, California
🔗 Apply here: www.grc.org/multi-drug-e...

#GRC #MultidrugEfflux

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'Decision in process'

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I really enjoyed working on this project during my postdoc in @bucknerlab.bsky.social' lab. It was also a pleasure to work with Parisa and Ayesha who made substantial contributions to the paper.

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However, we found that not all nucleoside analogues reduced plasmid transfer. While most of them had no effect, some promoted conjugation under the tested conditions (4/4)

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RNA-seq pointed to species-specific effects: impaired motility/flagellar gene expression in E. coli, and altered DNA damage response plus methionine metabolism in K. pneumoniae (3/4)

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Mechanistically, azidothymidine reduced plasmid transfer without acting through membrane disruption or ROS. The effects were species-specific and much more interesting than a simple screening hit (2/4)

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Mechanistic insights into plasmid transfer inhibition in Enterobacterales by nucleoside analogues - npj Antimicrobials and Resistance npj Antimicrobials and Resistance - Mechanistic insights into plasmid transfer inhibition in Enterobacterales by nucleoside analogues

My main postdoc paper is now out in @natureportfolio.nature.com npj Antimicrobials and Resistance! www.nature.com/articles/s44.... Using flow cytometry, we show that the nucleoside analogues azidothymidine, didanosine, stavudine, and trifluridine reduced transfer of AMR plasmids pCT and pKpQIL (1/3)

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He was a stray when they found him, but I assume German Shepherd mixed with Belgian Malinois perhaps? Very energetic and bitey 😂

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Meet Rundy! We adopted him back in January and he’s already taken over my life! 😃🥰

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And the preprint is out! www.biorxiv.org/content/10.6...

We compared plasmid conjugation in liquid and on solid across 13 AMR plasmids with different types of conjugative pili.

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I thought finding reviewers was the major bottleneck when submitting a paper, but now it seems journals struggle to find willing and able editors too...

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A picture of a clear night sky dotted with many stars.

A picture of a clear night sky dotted with many stars.

Starry night in Leamington Spa ✨

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Hi Tim, for now, i’m not interested in the kinetics. I just want to see whether there is a difference in intercellular accumulation between different strains. So I think fixation should hopefully work. Fingers crossed 🤞🏼

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It’s a a cationic antimicrobial peptide, which makes me worry about the membrane integrity :/

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Hi Adam, I would like to label my cells with SYTO84 and measure intracellular accumulation of a FITC-conjugated compound

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Does anyone have experience with fixing Salmonella cells prior to flow cytometry as my current institution does not run BSL-2 organisms in their flow machines.

I need to measure intracellular dye accumulation, but worried about the effects of fixation on membrane permeability/integrity #academicsky

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me on editorial manager as soon as I submit a paper

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Headshot of Jeff Cole

Headshot of Jeff Cole

We were deeply saddened to learn of the death of Professor Jeff Cole, a long-standing member who held many positions in the Society. Jeff was elected an Honorary Member in 2011. You can read his full obituary here: microb.io/46xYzkz

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Epistasis and co-adaptation in bacterial genome evolution Nature Reviews Genetics - Bacterial genome evolution is shaped by epistasis, which can constrain or promote specific evolutionary paths. The authors review how integrating the effects of epistatic...

I’ve spent a lot of time over the past two years thinking about genome evolution and how recent research revealing complex gene-gene interactions has complicated traditional ‘gene-centric’ genomic approaches to evolution. So here is a review that consolidates these thoughts!

rdcu.be/e6pHY

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I am deeply saddened by Jeff's passing. Jeff lived and breathed microbiology, and was still very much part of the microbiology community in @imibirmingham.bsky.social until a few weeks ago. He was supportive to students and staff and will be sorely missed by many, here in Birmingham and elsewhere

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It’s 2026 and reviewers still want RT-PCR to ‘confirm’ RNAseq data

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What really annoys me is that numerous grants and papers probably relied on this paper and now it’s all likely for naught. 😡 Such a waste of money and resources.

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Efflux pumps control intracellular drug-target kinetics by limiting rebinding in bacteria Efflux pumps disrupt antibiotic rebinding inside bacterial cells, amplifying multidrug resistance.

#NatMicroPicks

More than just pumps? 🦠💊

Bacterial efflux pumps not only block drug entry but also disrupt intracellular drug–target interactions by preventing repeated drug rebinding

#MicroSky

www.science.org/doi/10.1126/...

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Picture of a dog laying on a patch of grass.

Picture of a dog laying on a patch of grass.

Picture of a dog sitting and looking at the camera.

Picture of a dog sitting and looking at the camera.

Picture of a dog laying down and sleeping on a tiled floor.

Picture of a dog laying down and sleeping on a tiled floor.

Say hi to Rundy everyone! We rescued him as a stray from Cyprus through a charity. He’s the sweetest boy! 🥰

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Loved being @ox.ac.uk last wk for OxBacNet & seeing so many past @imibirmingham.bsky.social friends!

Presented @microbesng.bsky.social's poster: “To long read or not to long read” showing how ONT long-read sequencing outperforms Illumina for plasmid de novo assembly & #AMR gene detection #MicroSky

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I find that I always have to fight harder for a fair/higher salary, compared to my friends in industry. That shouldn’t be the case. I trained hard for many years and should be paid accordingly.

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The Resistance-Nodulation-Division efflux pump EefABC is highly conserved within lineages of E. coli commonly associated with infection Resistance-nodulation-division (RND) efflux pumps confer multidrug resistance in Gram-negative bacteria and are critical for many physiological functions including virulence and biofilm formation. The...

The coolest finding of my PhD is finally out! E. coli has a 7th RND pump that is present in phylogroups B2/D/E/F but absent in A/B1/C. As a result EefABC has been absent in all K-12 RND studies! Co-authored by the very talented Dr. Lizzy Darby. @jessicamablair.bsky.social
doi.org/10.1099/mgen...

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New paper just out in Microbial Genomics @microbiologysociety.org! As always, a great team effort! Well done all. 🤩

@imibirmingham.bsky.social @hannahpugh.bsky.social @leahburgess.bsky.social @alanmcn1.bsky.social @astimeosa.bsky.social

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Huge thanks to Kiran for juggling this alongside another project, and to Charlotte and Archie, our excellent master’s students, for their hard work. Special thanks to @babs-c.bsky.social for cell culture support, and to the Microbiology journal staff for a smooth publication process.

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Strain-dependent contribution of the AcrAB-TolC efflux pump to Klebsiella pneumoniae physiology Klebsiella pneumoniae is a prominent opportunistic pathogen increasingly associated with multidrug resistance and virulence. One of the main mechanisms of antimicrobial resistance in K. pneumoniae is ...

My first corresponding author research paper is now out in Microbiology (@microbiologysociety.org) Here, we show that the role of the major efflux pump AcrAB-TolC can differ between two widely used strains of Klebsiella pneumoniae. www.microbiologyresearch.org/content/jour...

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