New preprint by @merenbey.bsky.social, where they validate long-read metagenome assemblies by aligning reads to contigs, and find TERRIFYING levels of errors.
I'm honestly shocked. I have papers in review with conclusions based on metaMDBG assemblies. What now?
www.biorxiv.org/content/10.1...

GitHub - jakobnissen/samstrip: Strip SAM files of data not needed for alignment computations Strip SAM files of data not needed for alignment computations - jakobnissen/samstrip

My metagenomics group spends tens of TB storing BAM files.
I made a CLI tool to strip unneeded data from BAM/SAM files. We see 90-98% lower file sizes, with identical downstream results.
Get it at: github.com/jakobnissen/...
#metagenomics #bioinformatics #rustlang