This looks absolutely great. For those of us interested in pangenomes, I am sure this will be a super place to get data and the interface is very clean (plotly). Congrats to the authors (I don't know if they are on bsky): pangbank.genoscope.cns.fr
Nearly ten years after starting my PhD, excited to share our study on the metabolic diversity of extraintestinal pathogenic E. coli. An exciting journey with @vallenet.bsky.social sky.social (@genolabgem.bsky.social) and Erick Denamur (@iame-umr1137.bsky.social).
journals.asm.org/doi/10.1128/...
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📢 Job opening — Bioinformatics Engineer
Join the MicroScope platform (LABGeM, CEA/Genoscope) to develop tools and pipelines for microbial genomics.
📍 Evry, France | ⏳ Fixed-term contract
🔗 bit.ly/3Z5WSXc
@ifb-elixir-fr.bsky.social
📢 Hiring: Bioinformatics Engineer position funded by the ANR PanGAIMiX, for the development of new methods in the PPanGGOLiN software suite.
💻 Build cool tools for #pangenomics
🔬 computer science × biology
📍 Evry, France | ⏳ Fixed-term contract
👉 Interested? Contact us
🔗 bit.ly/3NfSP8o
🔍 Want to dive deeper?
Read the preprint and try the tool:
📄 doi.org/10.64898/202...
💻 github.com/labgem/PANOR...
@ifb-elixir-fr.bsky.social @genoscopeumr.bsky.social @genopole.bsky.social
#Bioinformatics #Pangenomics #Genomics
💡 Example use case on defense systems
We showcase PANORAMA for predicting defense systems in 941 Pseudomonas aeruginosa genomes and >6,000 genomes from four Enterobacteriaceae species.
A fully reproducible Google Colab notebook is available on GitHub:
github.com/labgem/PANOR...
💻 Open source & available now
Source code: github.com/labgem/PANOR...
Contributions and feedback are welcome!
📊 Key features
• Functional annotation of defense systems at the pangenome level
• Designed for comparative pangenomics
• Reproducible & easy to install
🧬 What does PANORAMA do?
Based on the PPanGGOLiN pangenome graphs, PANORAMA integrates advanced methods for rule-based prediction of macromolecular systems and comparative analysis of conserved features between different pangenomes.
🚀 New preprint out!
We are happy to introduce PANORAMA, a new bioinformatics tool for comparative pangenomics, designed to predict and compare biological systems across prokaryotic pangenomes.
It has been developed by @jpjarnoux.bsky.social
📄 Preprint: doi.org/10.64898/202...
PanGBank hosts pangenome graphs for more than 4,300 GTDB species reconstruted from GenBank/RefSeq genomes. 🦠🧬
A major step toward making large-scale pangenomics accessible to all.
@ifb-elixir-fr.bsky.social @genoscopeumr.bsky.social @genopole.bsky.social
Our PhD student Clémence Lauden is presenting her poster on Metapangenomic analysis within the Thermococcales at #Pangenome25 conference in Valencia🧬🌐
If you’re attending , don’t miss the chance to stop by, ask questions, and chat about the project.
See you there! 👋🎓
#pangenome #archaea
@tlemane.bsky.social presented PanGBank at #Pangenome25 conference in Valencia 🧬🌐
We’re thrilled to share this resource with the community and to see the growing interest in #pangenomics
We’ve just released a set of Google Colab tutorials to help you get started with PanGBank. 🧬💻
github.com/labgem/PanGB...
Whether you're new to the resource or looking to dig deeper, these step-by-step notebooks make it easy to jump in.
🔗 Try them out and tell us what you think!
#pangenomics
It has been developed @j-main-guy.bsky.social and @tlemane.bsky.social
The resource is also accessible through API and CLI, making it easy to integrate into your pipelines and workflows. 🚀🧬
We’re excited to announce the launch of the beta version of PanGBank website! 🧬🌐
pangbank.genoscope.cns.fr
PanGBank is a web-based platform for exploring, analyzing, and downloading pangenomes created with #PPanGGOLiN.
🔗 Dive in, test it out, and let us know what you think!
#pangenome
@genolabgem.bsky.social was there with @j-main-guy.bsky.social and @tlemane.bsky.social presenting the PanGBank database and new developments in metapangenomics #pangenome #PPanGGOLiN
🚀 We’re looking for a Master’s student to join the PanGAIMiX project to develop workflows for pangenome graph functional annotation at large scale
💻 Build cool tools for big genomic data
🔬 computer science × biology
📍 Evry | 📅 january 2026 | ⏳ 6 months
👉 Interested? Contact us
bit.ly/4mMLLfp
A new opportunity to join the team !
Come work with us !
We're on the lookout for a talented Software Development Engineer to join our team permanently at CEA and work on the MicroScope platform! 🚀💻 If you're passionate about software development and ready for a new challenge, we'd love to hear from you.
@genoscopeumr.bsky.social @cea.fr
Thrilled to announce the successful defense of the Habilitation à Diriger des Recherches (HDR) by Violette Da Cunha! 🎉📚 Congratulations on this well-deserved achievement!
#AcademicLife #Archaea
@genoscopeumr.bsky.social @univparissaclay.bsky.social @univevry.bsky.social
Congratulations to @jpjarnoux.bsky.social who just achieved a major milestone by successfully defending his thesis! 🎓✨ Welcome to the world of doctors!
#AcademicLife #ProudPI #pangenomics
@genoscopeumr.bsky.social @univparissaclay.bsky.social @cea.fr @univevry.bsky.social
We've been keeping a low profile for a while, but we've got lots of good news...
Comparative pangenomics. Source LABGeM.
We're offering a fully funded PhD to work on new methods for microbial #pangenomics using #LLM in collaboration with @guigau.bsky.social and Christophe Ambroise.
labgem.genoscope.cns.fr/2025/03/17/f...
Apply before April 27th.
@genoscopeumr.bsky.social @cea-paris-saclay.bsky.social
PPanGGOLiN is now available on Galaxy!
usegalaxy.fr/root?tool_id...
A huge thanks to Thomas Lacroix, Romane Libouban and @bebatut.bsky.social
MicroScope training in sunny Montpellier in Christmas mode