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Posts by Philip Patton

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Applications open for Quantitative Raptor Biologist postdoc at FitzPatrick Institute Call for applications for a postdoctoral fellowship in quantitative raptor biology; deadline 15 May 2026

Post-doc opportunity in raptor conservation at The FitzPatrick Institute of African Ornithology in Cape Town, South Africa - with @megmurg.bsky.social and me.

South African Citizen or have a valid work visa.
science.uct.ac.za/fitzpatrick/...

#Ornithology #RaptorResearch #AfricanOrnithology

20 hours ago 20 29 1 1
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Ecological Data Scientist, IS-1560-12 Job Opening: Ecological Data Scientist, IS-1560-12 at National Zoo and Conservation Biology Institute in Front Royal, VA.

Job Alert: Smithsonian's National Zoo and Conservation Biology Institute is hiring a Data Scientist with robust quantitative skills, knowledge of best practices with data management, and an ability to collaborate across units. Based in Front Royal, VA. trustcareers.si.edu/postings/c63...

1 day ago 4 3 0 0
Wildlife trade drives animal-to-human pathogen transmission over 40 years

Wildlife trade drives animal-to-human pathogen transmission over 40 years

New in @science.org โ€ผ๏ธ In the most comprehensive study to date, we show that wildlife trade is driving animal-to-human zoonotic spillover at a planetary scale, with +1 spillover per host every 10 years. Live animal markets and illegal trade pose even greater risks. ๐Ÿ”“ www.science.org/doi/10.1126/...

1 week ago 684 353 10 23
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The Willamette Pass in Oregon, at about 5100ft, is usually under about 10 feet of snow this time of year. Today, it is virtually snow free with a temperature of 61ยฐF.

1 month ago 28 13 3 3
Getting started with Pyseter

Want to ID whales and dolphins yourself with AnyDorsal? You can access the algorithm yourself via our Python package, Pyseter, philpatton.github.io/pyseter/gett..., or via Happywhale!

1 month ago 0 0 0 0
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Evaluating the Effectiveness of a Multispecies Matching Algorithm Applied to a Novel Species, Risso's Dolphins (Grampus griseus) Automated matching algorithms are an increasingly valuable tool in marine mammal research. A multispecies matching algorithm, originally described in Patton etย al. analyzes distinctive morphological ...

New paper alert! Alexandra Vanderzee found that AnyDorsal can effectively identify Risso's dolphins. This is a fun result because a) AnyDorsal wasn't trained on Risso's and b) it shows AnyDorsal can balance scars dorsal notches as separate ID information

onlinelibrary.wiley.com/doi/10.1111/...

1 month ago 6 4 2 0
Global south countries publish less with open access

Global south countries publish less with open access

Open access makes the rich get richer
#science #publishing #academia ๐Ÿงช๐Ÿ—บ๏ธ

nsojournals.onlinelibrary.wiley.com/doi/full/10....

1 month ago 55 31 0 3
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For decades biologists assumed ravens follow wolves to their kills.
Our paper @science.org shows something different: ravens rarely follow wolves far. Instead they remember areas where wolf kills are common and return to themโ€”sometimes from >150 km away.
doi.org/10.1126/science.adz9467
๐Ÿ“ทDan Stahler

1 month ago 216 69 4 9
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Methods for knowledge-based biodiversity monitoring and management under uncertainty (BioM) - UiO:Life Science BioM develops new interdisciplinary methods to model and govern biodiversity under uncertainty, combining ecology, statistics, and philosophy. The project delivers predictive tools, normative framewor...

2 PhD & 1 postdoc available at BioM in Oslo
www.uio.no/english/rese... Interdisciplinary methods to model and govern biodiversity under uncertainty. Re-post widely! Work with statistical ecologists Olav Skarpaas (Natural History Museum Oslo @uio.no) @t-ergon.bsky.social

1 month ago 20 25 0 0
Book cover for https://oliviergimenez.github.io/banana-book/

Book cover for https://oliviergimenez.github.io/banana-book/

๐Ÿ“˜ New book out soon !

Iโ€™m excited to share that ๐๐š๐ฒ๐ž๐ฌ๐ข๐š๐ง ๐€๐ง๐š๐ฅ๐ฒ๐ฌ๐ข๐ฌ ๐จ๐Ÿ ๐‚๐š๐ฉ๐ญ๐ฎ๐ซ๐ž-๐‘๐ž๐œ๐š๐ฉ๐ญ๐ฎ๐ซ๐ž ๐ƒ๐š๐ญ๐š ๐ฐ๐ข๐ญ๐ก ๐‡๐ข๐๐๐ž๐ง ๐Œ๐š๐ซ๐ค๐จ๐ฏ ๐Œ๐จ๐๐ž๐ฅ๐ฌ: ๐“๐ก๐ž๐จ๐ซ๐ฒ ๐š๐ง๐ ๐‚๐š๐ฌ๐ž ๐’๐ญ๐ฎ๐๐ข๐ž๐ฌ ๐ข๐ง ๐‘ ๐š๐ง๐ ๐๐ˆ๐Œ๐๐‹๐„ is being published by Chapman & Hall / CRC Press

Hope itโ€™s useful to students, researchers, and practitioners

#StatisticalEcology #NIMBLE

2 months ago 85 26 2 1
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Job Opportunities | University of Montana, Helena College & UM Western

Post Doc Alert: "large mammal monitoring in northwest Montana...part of a collaborative project between the University of Montana and Montana Fish, Wildlife, and Parks." More: www.schooljobs.com/careers/ummi... ๐Ÿงช

2 months ago 5 3 0 1
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Estimating species distributions with occupancy models Estimating where species live is one of the most common tasks in ecology. Recreational birders know that every field guide includes a range map showing where a species can be found, as well as habi...

Please check out my recently published demo on fitting singe-season, single-species occupancy models with PyMC.

Ecologists will like PyMC's automatic marginalization feature (adios discrete latent states!) and variety of fast No-U-Turn Samplers (eg, nutpie).

www.pymc.io/projects/exa...

2 months ago 0 0 0 0
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Time to publish ethically: DAFNEE, a database of academia-friendly journals in ecology and evolutionary biology.

New preprint: we advertise DAFNEE, a database of academia-friendly eco-evo-archaeo journals. 1/6
#AcademicPublishing #ecoevo #archaeology #EthicalPublishing #SocietyJournals #DiamondOpenAccess
doi.org/10.32942/X24...

9 months ago 78 69 1 6
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Gray whale numbers plummet to their lowest level in 50 years. Now far from their recovered level
www.seattletimes.com/seattle-news...

10 months ago 4 3 1 0
DAFNEE, a Database of Academia Friendly jourNals in Ecology and Evolution

dafnee.isem-evolution.fr

1 year ago 4 1 1 0

Shoutout to my incredible lab mate, Martin! Such a rad paper!

1 year ago 8 0 0 0

Thank you to all of my wonderful co-authors, who are too numerous to shout out individually!

1 year ago 0 0 0 0
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False negatives, i.e., an individual was resighted but erroneously marked as a first capture, dictated the optimal strategy in many cases. A 2% increase in the false negative rate translated to a 5% increase in the relative bias in abundance estimates. This rate is easy to compute in practice.

1 year ago 3 0 1 0
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We fed the results into a custom optimization tool to discern the optimal strategy, that is, the optimal method for generating capture histories with an algorithm, for each dataset. We found that true automation was optimal when the algorithm matched images well.

1 year ago 3 0 1 0
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Automating photo-ID creates tradeoffs between reducing effort and increasing estimation error. We explored these tradeoffs with a simulation study, informed by 39 photo-ID datasets representing 24 cetacean species.

1 year ago 1 0 1 0
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Iโ€™m thrilled to see my dissertationโ€™s second chapter published in Conservation Biology. In the paper, we found that researchers can use high-performance identification algorithms to reduce the cost of population assessments without biasing abundance estimates. tinyurl.com/ne8tbpw3

1 year ago 15 2 1 1
Plot showing the correlation between the false negative rate and parameter estimates from a capture-recapture model.

Plot showing the correlation between the false negative rate and parameter estimates from a capture-recapture model.

False negatives, i.e., an individual was resighted but erroneously marked as a first capture, dictated the optimal strategy in many cases. A 2% increase in the false negative rate translated to a 5% increase in the relative bias in abundance estimates. This rate is easy to compute in practice.

1 year ago 0 0 0 0
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Results from out optimization for three example datasets.

Results from out optimization for three example datasets.

We fed the results into a custom optimization tool to discern the optimal strategy, that is, the optimal method for generating capture histories with an algorithm, for each dataset. We found that true automation was optimal when the algorithm matched images well.

1 year ago 1 0 1 0
A schematic showing our methods for the simulation study.

A schematic showing our methods for the simulation study.

Automating photo-ID creates tradeoffs between reducing effort and increasing estimation error. We explored these tradeoffs with a simulation study, informed by 39 photo-ID datasets representing 24 cetacean species.

1 year ago 0 0 1 0

Iโ€™d love to be added if thereโ€™s space!

1 year ago 1 0 0 0

Exactly. Most procedures like this create more waste than they would have prevented.

1 year ago 1 0 0 0
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A deep learning approach to photoโ€“identification demonstrates high performance on two dozen cetacean species Researchers can investigate many aspects of animal ecology through noninvasive photoโ€“identification. Photoโ€“identification is becoming more efficient as matching individuals between photos is incre...

Hi everyone! I'm a PhD candidate studying new tools for assessing stocks of whales and dolphins. Here is the first chapter of my dissertation, where we explore the strengths and weaknesses of a multispecies individual identification algorithm. besjournals.onlinelibrary.wiley.com/doi/full/10....

1 year ago 4 0 0 0