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Posts by Babak Vajdi Hokmabad

Video

- How do immotile microbes escape confinement?

- They ferment, generate biogenic bubbles, and hitch a ride! 🫧

Very excited to release this work: lnkd.in/gwBEr3f7.

1 week ago 8 2 0 0
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🔥Just out in @science.org Magazine 🔥 Our work on the emergent behavior of active polar rods is now online!
www.science.org/doi/10.1126/...
🌟 Even more exciting: the work is featured on the cover

1 week ago 12 3 2 0
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Iran’s Students Are Protesting Again. Here’s Why. The unrest underlines the intensity of domestic discontent, even as Tehran’s government grapples with the threat of U.S. strikes. Here’s what to know.

Students at universities around Iran have been staging campus protests calling for the government to be overthrown, in the country’s first large-scale demonstrations since a brutal state crackdown on nationwide dissent last month. Here’s what to know.

1 month ago 65 19 7 0

Thank you, Saverio! It was a fun experiment, indeed, and there's so much more to explore :)

6 months ago 1 0 0 0

Excited to see this paper out @pnas.org

Microbial self-organization in response to self-made oxygen gradients! 🦠 🔄 🍥

6 months ago 6 1 0 1
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PhD or Master's position available for Fall 2026!

Interested in how actin drives cell crawling, eating, dividing, or osmoregulation? What about pathogenesis of a brain-eating amoeba? Or eukaryotic evolution? If so, apply through my website: katrinavelle.wixsite.com/science/cont...
Please share!

6 months ago 48 28 1 5
Video

We have a postdoc opening for a protistologist with biophysics inclinations to join our @hfspo.bsky.social project! (focus will be on characterising the morphology, ultrastructure and behaviour of excavates) #protistsonsky

Apply by Sept 17th (RTs appreciated!)
jobs.exeter.ac.uk/hrpr_webrecr...

8 months ago 47 49 1 0
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Excited to release our latest work:
doi.org/10.1101/2025...

Here, we describe how confined bacterial suspensions self-organize into structured domains of different motilities, in response to oxygen limitations🦠🍥

Bluetorial follows! [1/8]

1 year ago 8 5 1 1
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Genome duplication in a long-term multicellularity evolution experiment - Nature In the Multicellularity Long Term Evolution Experiment, diploid yeast evolve to be tetraploid under selection for larger multicellular size, revealing how whole-genome duplication can arise due to its...

1/46 Hey folks, we have a new paper out on the MuLTEE. Strap in and I’ll tell you the story of how this “little paper on polyploidy” turned into the most data rich paper our lab has produced, largely thanks to the leadership and work ethic of @kaitong25.bsky.social.

www.nature.com/articles/s41...

1 year ago 368 166 16 19

It was fun to uncover this story—bridging microbial physiology, biological pattern formation, & active matter physics. The results may even have implications for controlling microbes in applications. We'd love your feedback. Please report/share with whoever might be interested! [8/8]

1 year ago 2 1 0 0
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Many biological fluids are polymer solutions, whose viscoelasticity can enhance cell swimming and promote large-scale mixing.
We showed that the core-shell organization also arises in polymer solutions, but with fascinating additional flow fluctuations. [7/8]

1 year ago 1 1 1 0
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We then developed a biophysical model describing this interplay quantitatively. The model recapitulates the experiments, and also yields criteria for predicting the different ways in which confined bacterial populations self-organize under different conditions. [6/8]

1 year ago 1 1 1 0

Cells consume O2, creating a gradient that alters motility: (i) They move up the gradient toward the droplet boundary via aerotaxis, & (ii) They stop swimming in the anoxic droplet core and accumulate. These motility variations in turn reshape O2 fluxes. A feedback loop! [5/8]

1 year ago 1 1 1 0

By simultaneously measuring cell distributions, oxygen concentration, and swimming-generated fluid flow, we figured out that this spatial organization is driven by the interplay between cell metabolism-generated oxygen gradients and collective motility. [4/8]

1 year ago 1 1 1 0
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Surprisingly, when the droplets are big and concentrated, the cells self-organize into a concentrated inner "core" of immotile cells surrounded by a more dilute outer "shell" of highly motile cells. (See movie in 1st tweet.) In some cases, the core shrinks and disappears. [3/8]

1 year ago 1 1 1 0
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Bacteria often inhabit confined spaces, such as biological tissues/gels & soils/sediments, where metabolites are scarce. What influence does confinement have on a population of motile bacteria?
We addressed this question by studying quasi 2D droplets of swimming E. coli. [2/8]

1 year ago 1 1 1 0
Video

Excited to release our latest work:
doi.org/10.1101/2025...

Here, we describe how confined bacterial suspensions self-organize into structured domains of different motilities, in response to oxygen limitations🦠🍥

Bluetorial follows! [1/8]

1 year ago 8 5 1 1
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Intracellular competition shapes plasmid population dynamics Conflicts between levels of biological organization are central to evolution, from populations of multicellular organisms to selfish genetic elements in microbes. Plasmids are extrachromosomal, self-r...

I'm so happy that I can finally share the results of my first postdoc paper with @baym.lol!!! Turns out plasmids are an amazing system to study multi-scale evolution and we can track within-cell and between-cell dynamics!
(1/n) www.biorxiv.org/content/earl...

1 year ago 197 84 10 15
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The 🪱 mania continues!
In our latest study, led by Rosa, we explored the locomotion and dynamics of living worms—acting as active polymers—navigating a porous environment made of 3D-printed pillar arrays. And we found something surprising...

1 year ago 16 3 1 0
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Spatial population dynamics of bacterial colonies with social antibiotic resistance

#PNAS by @marlis.bsky.social and late Kevin B. Wood

www.pnas.org/doi/10.1073/...

1 year ago 39 7 1 2
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Stickiness matters! From powder handling to geophysical flows, cohesion in granular material plays a crucial role. We review in Soft Matter @roysocchem.bsky.social experimental approaches to create and control inter-particle adhesion pubs.rsc.org/en/content/a...

1 year ago 16 4 2 0
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🄱🄸🄾🄵🄸🄻🄼
🄱🄸🄾🄿🄷🅈🅂🄸🄲🅂

Fascinating work from Sebastian Gonzalez La Corte, Sujit Data, et al at CalTech on polymer-induced entropic attractions that hinder diffusion and lead bacteria to form long spaghetti-like cables within mucus and biofilms

Paper in Science Advances: www.science.org/doi/10.1126/...

1 year ago 128 21 5 0
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Fresh off the press, our work on wing deployment in Drosophila 🪰:
www.nature.com/articles/s41...
Work by: Simon Hadjaje, Ignacio Andrade-Silva, Marie-Julie Dalbe and Raphaël Clément

1 year ago 152 52 8 8
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Vodka can propel tiny robots across the water A popular science classroom demonstration could one day lead to applications in powering tiny robots.
1 year ago 36 8 4 6

Can I please be added here?

1 year ago 1 0 0 0
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This is a beautiful work Nico! Congrats!

1 year ago 1 0 1 0

Starter Pack: Collective #CellMigration /Dynamics is growing. Looking at related emergent phenomena eg. #intercallation, dorsal closure or branching #morphogenesis? Reach out! Also modelers, soft-matter physicists & YOUNG scientists etc etc!

go.bsky.app/DLUDYX3
#cellbio #SoftMatterPhysics #science

1 year ago 70 38 26 4

Can I please be added here?

1 year ago 1 0 0 0

Can I please be added here?

1 year ago 1 0 1 0