New work from our @mgrillo.bsky.social with @lgmartelotto.bsky.social and others. Capture somatic mutations in single-cell assays via RNA-targeted gap filling. Check it out!

Do you work with a strange model species and are frustrated by the lack of antibodies for immunos? Here's a web app that does some computational pre-screening for you.
sixpack-abscan.serve.scilifelab.se

Doktorand i biokemi Institutionen för biokemi och biofysik. SciLifeLab ( SciLifeLab ) är ett nationellt center för molekylära biovetenskaper med fokus på forskning inom hälsa och miljö. Centret kombinerar ledande

We're looking for a PhD student!
Join the team to develop new technologies for targeted spatial omics.
More info and instruction on how to apply at the following link:
su.varbi.com/what:job/job...

🔬🧬🔍 If you're interested in spatial omics and miRNAs, don’t miss our latest review!

We explore where the early field of spatial miRNomics stands, what’s missing, and why incorporating miRNAs matters for building richer spatial transcriptomic maps.

#SpatialOmics #miRNA #GeneRegulation

Our latest work is now live on bioRxiv! We use copy number variation inference to uncover tumor clonality from imaging-based spatial transcriptomics data. Check it out: doi.org/10.1101/2025...

Recent work led by our great @sergiomarcosalas.bsky.social, highlighting best practices and critical considerations when analyzing and interpreting @10xgenomics.bsky.social Xenium datasets.

A study from @sergiomarcosalas.bsky.social @nilssonlab.org and colleagues presents a comprehensive evaluation of Xenium in situ datasets and provides recommendations on analysis workflows. @scilifelab.se

www.nature.com/articles/s41...

Evolutionary convergence of sensory circuits in the pallium of amniotes The amniote pallium contains sensory circuits that are structurally and functionally equivalent, yet their evolutionary relationship remains unresolved. We used birthdating analysis, single-cell RNA a...

New paper alert! Led by the great Fernando Garcia Moreno, our lab's first venture into evolutionary developmental biology is out on @science.org
www.science.org/doi/10.1126/...

@agustinrobles.bsky.social writes here on the many reasons why spatial omics assays will need to integrate miRNAs.

Colorful dots on the ceiling as we celebrated Anastasia Magoulopoulou's defense last month, "Dissecting molecular signatures using padlock probes for deciphering pathological states".

A very elegant Dr. Erik Samuelsson celebrating the successful defense of his PhD dissertation "The Definition and Applications of Transcriptomic States in Cancer"!

a cartoon of a man looking out a window at the stars ALT: a cartoon of a man looking out a window at the stars

Hello world. Our lab has a new home here on Bluesky! We will post about spatial omics, science, nice papers and lab activities. The account will be collectively managed by lab members. Happy spatial-omics everyone!