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Posts by Haoran Cai

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Join us for a seminar by Dr. Francois Mallard (Institute de Biologie, École Normale Supérieure, Paris-France) about 'The genetic architecture of phenotypic plasticity' on 30th April, 2026, 3 pm CET. Zoom link here: polygenic-adaptation-network.org/seminars/

1 week ago 6 5 0 1
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Dynamics of Expression Variability Contribute to Retention of Small-Scale vs. Whole-Genome Duplicates Abstract. Genome analyses reveal that gene duplication in eukaryotes is pervasive, providing a primary source for the emergence of new genes. Nevertheless,

@haorancai.bsky.social and Des Marais investigated gene expression variability in duplicate genes, suggesting a mechanism facilitating gene expression divergence, functional gains, and duplicate retention following small-scale duplications.

🔗 doi.org/10.1093/gbe/evag077

#genome #evolution

1 week ago 5 6 0 0
GBE | Empirical Validation of the Nearly Neutral Theory at Divergence and Population-Genomic Scales Using 144 Placental Mammal Genomes

Figure credit: Léa Backory, Instagram: @lea_faitdesvagues

GBE | Empirical Validation of the Nearly Neutral Theory at Divergence and Population-Genomic Scales Using 144 Placental Mammal Genomes Figure credit: Léa Backory, Instagram: @lea_faitdesvagues

Bastian, Enard & Lartillot tested predictions of the nearly-neutral theory of molecular evolution across time scales, confirming the role of effective population size in tuning selection efficacy in placental mammals.

🖌️ Léa Backory

🔗 doi.org/10.1093/gbe/evag030

#genome #evolution

2 weeks ago 11 4 1 0

@genomebiolevol.bsky.social @official-smbe.bsky.social

2 weeks ago 0 0 1 0
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Dynamics of Expression Variability Contribute to Retention of Small-Scale vs. Whole-Genome Duplicates Abstract. Genome analyses reveal that gene duplication in eukaryotes is pervasive, providing a primary source for the emergence of new genes. Nevertheless,

🚨 New Paper 🚨
Thrilled to share new work with @evodaveo.bsky.social eo.bsky.social! We dive into the evolution of gene duplicates and demonstrate how expression variability might contribute to retention following duplication.

Read the full article here:
academic.oup.com/gbe/article/...

2 weeks ago 7 2 1 0

We posted a new theory preprint. I am very interested to hear what the community thinks about it.

We looked at the dynamics of evolution on several (simple) models of modular genotype-phenotype-fitness maps and found that populations approach a quasi-steady state we call "module-selection balance".

2 weeks ago 20 4 1 1
Lizard head on the journal
cover

Lizard head on the journal cover

Our work as Editor's choice in @evolletters.bsky.social !✨️

Developmental biases & micro- to macroevution in the lizard skull 🦎
academic.oup.com/evlett/advan...

3 weeks ago 10 8 0 0

The Cooper lab is hiring a postdoc with a strong background in mouse genetics and molecular biology to advance.our gene drive work. Must be extremely organized, engineering-minded, and outcomes-oriented. Spread the word and have interested candidates email me directly.

3 weeks ago 11 14 0 1
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HOME | Martin Lab

New group website: www.noramartin-lab.com
Get in touch if you are interested in joining the group, or know anyone who might be 📮

1 month ago 9 10 0 0
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Bridging developmental and statistical approaches to variation and evolution | PNAS Phenotypic variation is the raw material for evolutionary diversification and adaptation. However, a critical gap remains in evolutionary theory be...

How does development shape the variation evolution can act on?

In our new paper in @pnas.org , we bridge developmental dynamics and quantitative genetics, linking dynamical models of phenotype formation with the statistical parameters used to study evolutionary change

www.pnas.org/doi/10.1073/...

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Join us for this exciting seminar and hear about redundancy in genome-wide epistatic interactions!

1 month ago 2 1 0 0
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How does development affect the evolutionary process?

Join our symposium at www.evodevoconference26.com
in Glasgow this June. We have a strong lineup of invited speakers, chaired by me and @milocco.bsky.social

Submit your abstract before Thursday! ⏰

1 month ago 14 13 1 1
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Now online ‪Communications Biology!‬ We showed that variation aligns across biological levels. We proposed that #macroevolution mould #developmentalbias with a cascading effect on variation. #Microevolution, then, may be a result—not a cause of—macroevolution. nature.com/articles/s42...

9 months ago 8 3 0 1
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GitHub - lowrylab/WGCNA_agent Contribute to lowrylab/WGCNA_agent development by creating an account on GitHub.

Weighted Gene Co-expression Network Analysis (WGCNA) has been the go to program for analysis of gene expression modules for nearly two decades but it is a difficult to implement. To make it easier to use WGCNA, I used Codex to build a human in the loop agentic workflow. github.com/lowrylab/WGC...

1 month ago 8 5 1 0
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Methods for knowledge-based biodiversity monitoring and management under uncertainty (BioM) - UiO:Life Science BioM develops new interdisciplinary methods to model and govern biodiversity under uncertainty, combining ecology, statistics, and philosophy. The project delivers predictive tools, normative framewor...

2 PhD & 1 postdoc available at BioM in Oslo
www.uio.no/english/rese... Interdisciplinary methods to model and govern biodiversity under uncertainty. Re-post widely! Work with statistical ecologists Olav Skarpaas (Natural History Museum Oslo @uio.no) @t-ergon.bsky.social

1 month ago 20 25 0 0

Promises to be poppin (🍿)

BUT SRSLY PLEASE REGISTER, WE ARE SO EXCITED!!!!!!!!!!!!

1 month ago 17 5 1 0

A pleiotropic hitchhiking model recapitulates alignments between fly wing divergence and variation www.biorxiv.org/content/10.64898/2026.02...

2 months ago 3 2 0 1
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Don't miss this issue's Editor's Choice article: "Gene network topology drives the mutational landscape of gene expression" by Sylvain Pouzet & Arnaud Le Rouzic. Free to read here: doi.org/10.1093/evol...

6 months ago 7 6 0 1
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In #GENETICS, a new model developed by @christianlandry.bsky.social and colleagues examines how molecular dominance determines total protein activity and contributes to phenotypic dominance. buff.ly/CfaTDp7

2 months ago 10 8 1 0
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PhD Research Fellows in geosciences, planetary or exoplanetary sciences – up to three positions (294610) | University of Oslo Job title: PhD Research Fellows in geosciences, planetary or exoplanetary sciences – up to three positions (294610), Employer: University of Oslo, Deadline: Sunday, March 1, 2026

Apply for PhD Fellowships at the Centre for Planetary Habitability in Oslo! There are projects for geologists, paleontologists, paleobiologists, astrobiologists, stats-y folks, geoscientists and planetary folks! www.jobbnorge.no/en/available...

2 months ago 9 13 0 0

Our paper is out in MBE! doi.org/10.1093/molb...

We tracked TF binding site evolution across 589 grass species, and found that while binding preferences are pretty stable over 80 million years of evolution, individual binding sites have turned over a lot.

Thread here: bsky.app/profile/char...

4 months ago 24 16 1 0
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Davis Summer Population Genomics Program Want to learn population genetics? Please fill out this form to indicate your potential interest in a 2-week intensive online summer population genetics course taught by Jeffrey Ross-Ibarra and Graham...

Fun news! @gcbias.bsky.social and I are teaching a 2-week online population genetics workshop this summer to raise money for the Center for Population Biology at UC Davis. We're trying to gauge interest -- please fill this out if you might be interested! And please share broadly!

2 months ago 140 168 6 6
MBE | Highlight: Dark skin and cancer suppression in humans—an evolutionary spandrel?

MBE | Highlight: Dark skin and cancer suppression in humans—an evolutionary spandrel?

The recent MBE Review on the evolution of dark skin in humans is the focus of January's Highlight.

Highlight: Dark skin and cancer suppression in humans—an evolutionary spandrel?
🔗 doi.org/10.1093/molbev/msag012

#evobio #molbio

2 months ago 8 4 1 0
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Chromatin state architecture governs transcription factor accessibility across plant genomes Author summary In eukaryotes, DNA is tightly associated with histone proteins. Histone covalent modifications and histones isoforms, also called histone variants provide most of the complexity of chro...

This is a very special paper for me. I had the idea of combining transcription factor binding with chromatin in 2016/8. It took some time, but thanks to Fred and Vikas, we can finally share the story in @plos.org Genetics looking at chromatin states in Arabidopsis and Marchantia. #PlantScience

3 months ago 75 38 3 0
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Homepage - 2026 Population, Evolutionary, and Quantitative Genetics Conference Visit our website to learn more.

PEQG! My favorite conference ever*. Single session, fantastic talks, great discussions. Only once every 2 years. And in the best conference location too! Abstract deadline coming up Feb 5!

*Disclosure: I am required to say it's the best conference because it is and I told my mom I wouldn't lie.

3 months ago 49 26 2 1
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Assessing the Impact of Whole Genome Duplication on Gene Expression and Regulation During Arachnid Development Abstract. Whole genome duplication (WGD) generates a new genetic material that can contribute to the evolution of developmental processes and phenotypic di

A genome-wide comparison of #gene regulatory sequences & embryonic gene expression in arachnids - new insights into the impact of the arachnopulmonate whole #genome duplication academic.oup.com/gbe/article/... #biodiversity #genomics

4 months ago 23 10 0 0

How do bacteria deal with double costs? And how costly are unusual levels of mistranslation anyway? In short - antibiotics are more of an issue than less/more mistranslation, but the latter changes how populations deal with antibiotics. For the long story, check out our new paper!

4 months ago 22 10 0 0
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Research Associate-Fixed Term - East Lansing, Michigan, United States Position Summary The Lowry Lab at Michigan State University is searching for a postdoctoral research associate to conduct molecular and physiological experiments to understand the causes of genetic va...

I am currently searching for a new postdoctoral researcher to study the evolution, genetics, and physiology of cold acclimation and freezing tolerance in switchgrass at Michigan State University. This work will be funded by a newly funded five-year DOE grant. careers.msu.edu/jobs/researc...

5 months ago 60 82 0 3
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Curator of Birds - Royal Ontario Museum - Career Page Apply to Curator of Birds at Royal Ontario Museum in Toronto, ON, Canada.

TWO curatorial positions at the Royal Ontario Museum, Toronto, ON, Canada. Curator of Birds, and Curator of Plants and Sustainability... please pass the word and amplify!

royalontariomuseum.applytojob.com/apply/XBR2Yc...

&

royalontariomuseum.applytojob.com/apply/Sf2iAO...

5 months ago 5 10 0 0
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Rigorous validation of ecological models against empirical time series - Nature Ecology & Evolution Validating theoretical models against empirical data presents challenges. Here the authors present an assumption-light method to validate ecological models against time series data, along with a dedic...

Ecology faces an accumulation of models but not an accumulation of confidence. Our new paper w/ Jonathan Levine www.nature.com/articles/s41... in @natecoevo.nature.com introduces a rigorous test rooted in queueing theory to falsify inadequate models and build confidence in useful ones.

5 months ago 100 39 0 1