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Posts by Carsen Stringer

Some reports say over 500 schools, 55 libraries, & 25 universities hit.
You can debate the numbers, but hitting Sharif University & Beheshti is like hitting MIT & Stanford. I keep wondering: How would the scientific community respond differently if it was those universities? Whatโ€™s the difference?

1 week ago 472 191 6 5
The planet Jupiter with its cloud bands seen in shades of pink, rusty red, blue, and purple. The Great Red Spot is a deep navy blue, surrounded by bands and swirls of pink, and light blue.

The planet Jupiter with its cloud bands seen in shades of pink, rusty red, blue, and purple. The Great Red Spot is a deep navy blue, surrounded by bands and swirls of pink, and light blue.

Hubble's ultraviolet view of Jupiter shows the planet in hues of pink and blue.

Hubble's ultraviolet view of Jupiter shows the planet in hues of pink and blue.

jupiter wishes you a very happy trans day of visibility ๐Ÿณ๏ธโ€โšง๏ธ

2 weeks ago 9058 2772 26 54
Graphical abstract showing that NMDAR immunisation drives psychosis-like behaviour in mice, while clozapine reverses this. Upper panel: arrows show NMDAR immunisation producing a mouse exhibiting psychosis-like behaviour, with clozapine reversing this effect. Lower panels: anti-NMDAR antibodies bind neuronal NMDA receptors, which are then eliminated by microglia via phagocytosis, leading to psychosis. Clozapine restores NMDA receptor levels by reducing anti-NMDAR antibody levels, consistent with an immunomodulatory mechanism of action.

Graphical abstract showing that NMDAR immunisation drives psychosis-like behaviour in mice, while clozapine reverses this. Upper panel: arrows show NMDAR immunisation producing a mouse exhibiting psychosis-like behaviour, with clozapine reversing this effect. Lower panels: anti-NMDAR antibodies bind neuronal NMDA receptors, which are then eliminated by microglia via phagocytosis, leading to psychosis. Clozapine restores NMDA receptor levels by reducing anti-NMDAR antibody levels, consistent with an immunomodulatory mechanism of action.

๐Ÿฅ๐ŸŽ‰The Psychosis Collective proudly presents our first preprint

๐‚๐ฅ๐จ๐ณ๐š๐ฉ๐ข๐ง๐ž ๐ฌ๐ฎ๐ฉ๐ฉ๐ซ๐ž๐ฌ๐ฌ๐ž๐ฌ ๐š๐ฎ๐ญ๐จ๐ข๐ฆ๐ฆ๐ฎ๐ง๐ข๐ญ๐ฒ ๐๐ซ๐ข๐ฏ๐ข๐ง๐  ๐ฉ๐ฌ๐ฒ๐œ๐ก๐จ๐ฌ๐ข๐ฌ-๐ฅ๐ข๐ค๐ž ๐›๐ž๐ก๐š๐ฏ๐ข๐จ๐ฎ๐ซ ๐ข๐ง ๐ฆ๐ข๐œ๐ž

๐˜ˆ ๐˜ฅ๐˜ช๐˜ด๐˜ค๐˜ฐ๐˜ท๐˜ฆ๐˜ณ๐˜บ ๐˜ซ๐˜ฐ๐˜ถ๐˜ณ๐˜ฏ๐˜ฆ๐˜บ ๐˜ช๐˜ฏ ๐˜ต๐˜ฉ๐˜ณ๐˜ฆ๐˜ฆ ๐˜ข๐˜ค๐˜ต๐˜ด

starring Le He & Harriet Feldman

www.biorxiv.org/content/10.6...

We wanted to understand how antipsychotics work. Thread๐Ÿงต

2 weeks ago 78 33 3 6

๐Ÿ‘‹ Neuromatch is looking for more TAs to help facilitate comp neuro + neuroAI learning this summer! You'll get to work with students from around the world and share your expertise with the global community ๐Ÿง  ๐ŸŒŽ ๐Ÿค– ๐ŸŒ๐Ÿ’ป ๐ŸŒ #cosyne2026 #neuroscience

4 weeks ago 13 10 0 0

#Cosyne2026 check out poster 3-104 by @atika-syeda.bsky.social to learn about the impact of behaviors on visual cortical activity ๐Ÿง  ๐Ÿญ

1 month ago 21 2 0 0
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For this year's Neuromatch Computation Neuroscience course, the Curriculum Team is adding a new Day ๐Ÿฅ๐Ÿฅ๐Ÿฅ

Time series analysis and signal processing!

We're looking for 5-10 content contributors with relevant neuro+DSP experience for various tasks: co-Day Lead, video, slides, code tutorials, etc.

1 month ago 27 5 1 1
Graph Neural Networks Recover Interpretable Circuit Models from Neural Activity โ€“ FlyVis-GNN

Friday, 13:15 (Poster 2-048) at @cosynemeeting.bsky.social #cosyne2026: @allierced.bsky.social and @lappalainenjk.bsky.social present how they made GNNs learn interpretable circuit models from neural activity. Code: saalfeldlab.github.io/flyvis-gnn/

1 month ago 10 5 0 0
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This week we are introducing neuromodulatory assembloids.

Over the past few years, many circuits and cell-cell interactions have been modeled in assembloids, but these systems have not systematically incorporated neuromodulation.

1 month ago 36 9 1 1

1/7 ๐Ÿง  My journey into development begins with this work and question: how does the brain's spatial navigation system develop? We found that the neural networks for spatial navigation (tori and rings) are preconfigured and only later anchor gradually to the world with experience! ๐Ÿงต

1 month ago 153 61 7 15
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I have just arrived at @cosynemeeting.bsky.social ! During my flight, as I thought about opening remarks (and had a glass of wine), I got to reflect on why I love neuroscience. Maybe other folks are doing the same and would like to read or add, so I thought I'd do something unusual and share!

1 month ago 112 19 0 1
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Hippocampus a โ€˜general-purpose statistical learning machineโ€™ New cross-species findings may help settle a long-standing debate about whether the hippocampus is required for passively learning information.

Whether the hippocampus is involved in unrewarded learning has been a controversial question. A new preprint finds that it may be critical for passively learning information.

By @natmesanash.bsky.social

#neuroskyence

www.thetransmitter.org/memory/hippo...

1 month ago 62 19 0 2

There's no better way to learn than to teach! Help make NMA a resounding success!

1 month ago 9 5 0 0
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New paper hot off the (pre-)press! We dig into the evolutionary origins of neural computations for behavioral control across mice, monkeys, and humans: www.biorxiv.org/content/10.6....

As our lab's first foray into comparative analysis of neural dynamics, Iโ€™m super excited about this work! 1/18

1 month ago 137 48 7 1
Will you be at COSYNE 2026?

Come see us at the Neuromatch booth

Will you be at COSYNE 2026? Come see us at the Neuromatch booth

We're excited for #COSYNE2026 in Lisbon, Portugal, 12โ€“17 March!

Weโ€™re looking forward to connecting with the community and sharing our work at @cosynemeeting.bsky.social. If youโ€™re attending, letโ€™s meet and continue building an open, collaborative #CompNeuro ecosystem.

www.cosyne.org

1 month ago 12 4 0 0
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First whole-brain recording of social sound processing in a vertebrate. Surprises start in the hindbrain; thalamus gates conspecific calls; male and female brains diverge downstream. Work by @joerghenninger.bsky.social, @mh123.bsky.social sky.social and team. www.biorxiv.org/content/10.6...

1 month ago 125 49 7 4

It was bad when I thought a human had okayed it and itโ€™s bad now that it looks like an AI did, bc this is EXACTLY why they wanted that thing - so that when people call them monsters for bombing a school full of little girls, they can say โ€œcomputer glitch, wasnโ€™t our fault, you canโ€™t call us thatโ€

1 month ago 29 9 2 0
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Two-photon calcium imaging at 24,000 lines/s, with the resonant axis spanning 4x what other systems can do. Inertia-free. Diffraction-limited. No tradeoffs. Che-Hang Yu developed a 4x angle multiplier for laser scanning. His paper is out today: opg.optica.org/optica/fullt... 1/n #fluorescenceFriday

1 month ago 115 27 3 3
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Are you working at the interface of #neuroscience and ML/AI? Share your research at Janelia in Nov! ๐Ÿง  ๐Ÿค– janelia.news/NAI26

1 month ago 12 5 0 0

Years ago I registered glue [dot] wiki because of the sheer quantity of contextual knowledge surrounding glue in research that literally has no venue or medium of knowledge transfer

2 months ago 9 2 1 0
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Building compositional tasks with shared neural subspaces Nature - The brain can flexibly perform multiple tasks by compositionally combining task-relevant neural representations.

Thrilled that my paper is out in the @nature.com. We explored how the brain builds complex tasks by compositionally combining simpler sub-task representations. The brain flexibly performs multiple tasks by dynamically reusing neural subspaces for sensory inputs and motor actions

rdcu.be/eRVUk

2 months ago 131 47 4 1
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GitHub - MouseLand/suite2p: cell detection in calcium imaging recordings cell detection in calcium imaging recordings. Contribute to MouseLand/suite2p development by creating an account on GitHub.

5) Code is available at github.com/mouseland/su.... Thanks also to contributions from Chris Ki, Nicholas Del Grosso, @lafosse.bsky.social , and @qqzhang.bsky.social ! ๐Ÿ”ฅ๐Ÿ’ป pip install suite2p --upgrade ๐Ÿ’ป๐Ÿ”ฅ

2 months ago 3 0 0 0
Suite2p GUI features including correlation visualization, automated ROI merging, motion-correction movie viewing, registration metrics, and Rastermap visualization of neural activity

Suite2p GUI features including correlation visualization, automated ROI merging, motion-correction movie viewing, registration metrics, and Rastermap visualization of neural activity

4) Suite2p has a GUI with many visualizations and tools - we recommend starting there to run the algorithm and explore the data.

2 months ago 1 0 2 0
ROI detection. a, Frames are binned in time (left) and then high-pass filtered in space and time (right). b, Time-averaged thresholded activity from convolved square templates of different sizes. c, Initialization of new ROI with best fitting square template from b. d, Initial time trace corresponding to the dot product of the template in c with each movie frame. e, Iterative template refinement for four example ROIs. f, Example region with many cells detected and their spatial overlaps (top left), temporal overlaps (top right) and active frames crossing the threshold (bottom). g, Detected ROIs divided by the sizes of their initial square templates.

ROI detection. a, Frames are binned in time (left) and then high-pass filtered in space and time (right). b, Time-averaged thresholded activity from convolved square templates of different sizes. c, Initialization of new ROI with best fitting square template from b. d, Initial time trace corresponding to the dot product of the template in c with each movie frame. e, Iterative template refinement for four example ROIs. f, Example region with many cells detected and their spatial overlaps (top left), temporal overlaps (top right) and active frames crossing the threshold (bottom). g, Detected ROIs divided by the sizes of their initial square templates.

3) We developed an ROI detection algorithm which implements matrix decomposition with L0-sparsity constraints in both space and time.

2 months ago 1 0 2 0
a, Reference image is computed by iterative re-alignment of a random subset of frames. b, Rigid motion offsets are computed by correlation of whitened reference and frame, i.e. phase correlation. c, Calculated X/Y rigid motion offsets. d, Non-rigid motion offsets computed by dividing image into overlapping blocks, computing phase correlation in each block, smoothing across blocks, taking the optimal shifts per block and upsampling them via bilinear interpolation. e, Timing as a function of number of frames in recording - Hz estimated from slope

a, Reference image is computed by iterative re-alignment of a random subset of frames. b, Rigid motion offsets are computed by correlation of whitened reference and frame, i.e. phase correlation. c, Calculated X/Y rigid motion offsets. d, Non-rigid motion offsets computed by dividing image into overlapping blocks, computing phase correlation in each block, smoothing across blocks, taking the optimal shifts per block and upsampling them via bilinear interpolation. e, Timing as a function of number of frames in recording - Hz estimated from slope

2) Motion correction is very important in recordings of awake, behaving animals. We perform *fast* non-rigid motion correction (170 frames per sec).

2 months ago 3 0 1 0
Suite2p pipeline. a, Example volume imaging data. b, X/Y motion correction (left: before, right: after). c, ROI detection (left) and trace extraction with neuropil extraction based on surrounding pixels (right). d, Classification of ROIs into somatic and non-somatic (i.e. dendrites and other neuropil). e, The graphical user interface (GUI) can be used for manual curation and results visualization. f, Multi-plane recording of over 100,000 neurons using a standard Thorlabs Bergamo2 scope (see Methods for exact configuration). Somatic ROIs for example plane shown in different colors. g, Neural activity raster from recording in f, with neurons sorted by Rastermap, colored by the corridor that the mouse is in

Suite2p pipeline. a, Example volume imaging data. b, X/Y motion correction (left: before, right: after). c, ROI detection (left) and trace extraction with neuropil extraction based on surrounding pixels (right). d, Classification of ROIs into somatic and non-somatic (i.e. dendrites and other neuropil). e, The graphical user interface (GUI) can be used for manual curation and results visualization. f, Multi-plane recording of over 100,000 neurons using a standard Thorlabs Bergamo2 scope (see Methods for exact configuration). Somatic ROIs for example plane shown in different colors. g, Neural activity raster from recording in f, with neurons sorted by Rastermap, colored by the corridor that the mouse is in

1) Suite2p is a complete pipeline for processing large optical recordings of neurons, including motion correction, ROI detection, classification, and manual curation.

2 months ago 3 0 1 0
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๐Ÿ”ฌ๐Ÿง  Releasing the 1.0 version of #Suite2p and THE PAPER w/ @marius10p.bsky.social! Now with GPU acceleration. Want to use Suite2p but donโ€™t have 100,000 neuron recordings? We show you how to get those with a standard 2p microscope #neuroscience #imaging #neuroAI www.biorxiv.org/content/10.6...

2 months ago 100 35 2 2
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โ€œI Have Been Here Too Longโ€: Read Letters from the Children Detained at ICEโ€™s Dilley Facility Hundreds of children are currently being held with their parents at an immigration detention center in Dilley, Texas. In letters and drawings, eight kids convey the pain of feeling trapped with no end...

President Mandela said, "there can be no keener revelation of a society's soul than the way in which it treats its children."

2 months ago 762 291 8 11
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$1.65M per day in DC alone. Thatโ€™s approximately two NIH R01 Grant *years* burned per day. Ninety *five year* R01s projects burned in the last seven months with no end in sight.

Instead of lasting scientific advance we getโ€ฆ.what?
Civil rights violations and authoritarian replacement of democracy.

2 months ago 71 50 2 0

๐Ÿšจ new work from the lab on how eye movements ๐Ÿ‘€ versus orofacial movements influence ๐Ÿญ visual cortex activity ๐Ÿง  #neuroscience #behavior #neuroAI

2 months ago 45 11 0 0
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Excited to share โ€œOrofacial behaviors, not eye movements, govern neural activity in mouse visual cortexโ€
www.biorxiv.org/content/10.6...
Summary below...

2 months ago 41 12 2 2