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Posts by Nicolas Nesi

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L’appel Ă  l’aide du MusĂ©um national d’histoire naturelle, trĂšs dĂ©labré : « Les ossements minĂ©ralisĂ©s explosent littĂ©ralement » Moisissures dans les collections, bibliothĂšque inondĂ©e, fissures dans les murs
 Alors que l’établissement cĂ©lĂšbre ses 400 ans, fort d’une importante frĂ©quentation et d’une renommĂ©e scientifique intern...

www.lemonde.fr/planete/arti...

2 days ago 0 0 0 0
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Luca a-t-il vraiment existĂ© ? Le terme de Luca signifie : the Last Universal Common Ancestor ; en français, le dernier ancĂȘtre universel commun Ă  tous les ĂȘtres vivants connus. Le mot « dernier » signifie qu'en remontant le temps,...

The "Last Universal Common Ancestor", Luca, en français, est le "dernier" ancĂȘtre universel commun Ă  tous les ĂȘtres vivants connus. Que reprĂ©sente Luca?
Pour en savoir+ l'article de Guillaume Lecointre zoologiste & systématicien @isyeb.mnhn.fr paru sur le site @mnhn.fr
👉 www.mnhn.fr/fr/luca-a-t-...

3 weeks ago 8 4 0 0
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Le marsouin du Yangzi, dernier cĂ©tacĂ© d’eau douce chinois, sauvĂ© de l’extinction grĂące Ă  l’interdiction de pĂȘcher sur toute la longueur du fleuve La population de l’animal, surnommĂ© « l’ange souriant du Yangzi », repart Ă  la hausse, avec 177 individus supplĂ©mentaires recensĂ©s par rapport Ă  2022.

www.lemonde.fr/planete/arti...

1 month ago 0 0 0 0
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Postdoctoral Position – EmerCoV Project (ANR) / Postdoctorat – Projet EmerCoV (ANR)​ We seek a highly motivated postdoctoral researcher for the ANR-funded EmerCoV Project studying emergence dynamics and virus-host interactions of sarbecoviruses in bats to join a multidisciplinary team...

Postdoctoral Position SARS-CoV evolution in bats. Caen university France
euraxess.ec.europa.eu/jobs/415653

1 month ago 0 0 0 0

Sorry, just retry and it is working with pip. This time it has downloaded phykit-2.1.28-py2.py3-none-any.whl and not a .egg

1 month ago 1 0 1 0

yes doing it, thanks.

1 month ago 0 0 1 0

And pip install in wsl ubuntu work but it is 2.1.5
Git clone and make work for the last version, but have to use phykit-runner.py

1 month ago 0 0 0 0

Tried to install last version in a micromamba env using pip. But failed only have pk_ and a .egg no phykit.

1 month ago 1 0 1 0

Thanks for your useful tools! I am confused with the different version. On conda the last one is 2.1.5 but github 2.1.27. Will you add the last version to Conda too?

1 month ago 1 0 1 0
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Fourmis : ces reines qui se passent de mĂąles et d’ouvriĂšres Des chercheurs dĂ©crivent une organisation sociale dĂ©routante chez une espĂšce de fourmi japonaise qui ne produit que des reines.

Fourmis : ces reines qui se passent de mñles et d’ouvriùres
A lire sur 'Réalités Biomédicales'
www.lemonde.fr/realites-bio...

1 month ago 16 12 0 0
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Hiring for 3 positions: Research Assistant, Field Research Coordinator, and Postdoc I am looking to hire 3 people into my lab this year. I am still doing the paperwork to get the jobs officially posted but I want to send the word out and screen potential applications right away. R


I am hiring a research assistant (vampire bats), a Panama fieldwork coordinator (vampire bats), and also considering postdoc apps (social behavior, any species): socialbat.org/2026/02/19/h...

2 months ago 74 103 4 7
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En GuinĂ©e, un crapaud vivipare, des chimpanzĂ©s et des chauves-souris face Ă  la mine de fer des monts Nimba Au cƓur du site classĂ© au Patrimoine mondial de l’Unesco en 1981, la SociĂ©tĂ© des mines de fer de GuinĂ©e s’apprĂȘte Ă  lancer la premiĂšre phase d’un chantier d’exploitation qui menace des Ă©cosystĂšmes d’u...

www.lemonde.fr/afrique/arti...

2 months ago 0 0 0 0
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6 incredible new dinosaurs we discovered in 2025 Palaeontologists reported some remarkable dinosaur fossils this year, including a Velociraptor relative, a dome-headed pachycephalosaur and one of the most heavily armoured creatures that ever lived

Palaeontologists reported some remarkable dinosaur fossils this year, including a Velociraptor relative, a dome-headed pachycephalosaur and one of the most heavily armoured creatures that ever lived

3 months ago 9 4 0 0
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William Bond, grasslands researcher who reminded conservation that context matters, has died Founder’s Briefs: An occasional series where Mongabay founder Rhett Ayers Butler shares analysis, perspectives and story summaries. In recent years, one of the loudest ideas in environmental policy


William Bond challenged the idea that forests are nature’s default, arguing grasslands & savannas are ancient ecosystems.

As mass tree-planting boomed, he warned that blanket afforestation can harm biodiversity and water systems. His work pushed conservation to start with how landscapes function.

3 months ago 35 9 0 1
Chauve-souris en vol dans la nuit devant un champ d'éoliennes avec leurs feux rouges de balisage allumés.

Chauve-souris en vol dans la nuit devant un champ d'éoliennes avec leurs feux rouges de balisage allumés.

Une Ă©tude du @cesco-lab.bsky.social confirme que les #chauves-souris sont attirĂ©es par les feux rouges de balisage nocturne des #Ă©oliennes. Un balisage circonstanciĂ© permettrait de rĂ©duire les risques pour la faune volante, tout en maintenant la sĂ©curitĂ© aĂ©rienne 👉 www.mnhn.fr/fr/actualite...

4 months ago 16 6 0 1
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Meet the Tiny Bat That Hunts Like a Lion In Panama’s forests, researchers discovered that tiny fringe-lipped bats hunt with the patience and precision of big cats.

🩇 in the news.

#bats #lovebats #nature #wildlife

scitechdaily.com/meet-the-tin...

4 months ago 25 8 1 2
Photo montage of Tinamus resonans sp. nov., a new species of tinamou from the montane forests of the Serra do Divisor, western Amazonia, Brazil. The species is distinguished by a unique combination of plumage pattern, vocal repertoire, and ecological characteristics, including a conspicuous dark slate facial mask, vivid rufous-cinnamon underparts, and a uniform brownish-gray back. Its vocalizations are remarkable, consisting of long and powerful songs that echo strikingly across the steep montane slopes, producing a characteristic resonant effect. The species was documented exclusively at higher elevations within a transitional zone between submontane and stunted forests, where the understory is densely structured by root mats. A preliminary population estimate, based on field detections and spatial extrapolation, suggests approximately 2,106 individuals restricted to the Serra do Divisor massif. Although no immediate anthropogenic pressures were observed within its range, the species may be highly vulnerable to climate change and to proposed infrastructure projects that threaten the integrity of this federally protected region. The discovery of T. resonans highlights the biological uniqueness of the Serra do Divisor, reinforces its status as a center of montane endemism, and underscores the critical importance of maintaining its long-term conservation.

Photo montage of Tinamus resonans sp. nov., a new species of tinamou from the montane forests of the Serra do Divisor, western Amazonia, Brazil. The species is distinguished by a unique combination of plumage pattern, vocal repertoire, and ecological characteristics, including a conspicuous dark slate facial mask, vivid rufous-cinnamon underparts, and a uniform brownish-gray back. Its vocalizations are remarkable, consisting of long and powerful songs that echo strikingly across the steep montane slopes, producing a characteristic resonant effect. The species was documented exclusively at higher elevations within a transitional zone between submontane and stunted forests, where the understory is densely structured by root mats. A preliminary population estimate, based on field detections and spatial extrapolation, suggests approximately 2,106 individuals restricted to the Serra do Divisor massif. Although no immediate anthropogenic pressures were observed within its range, the species may be highly vulnerable to climate change and to proposed infrastructure projects that threaten the integrity of this federally protected region. The discovery of T. resonans highlights the biological uniqueness of the Serra do Divisor, reinforces its status as a center of montane endemism, and underscores the critical importance of maintaining its long-term conservation.

Huge News from the Western Amazon: it's the year 2025 and we are still describing entirely new, strikingly-distinctive large-bodied bird species! Behold Tinamus resonans sp. nov. the Slaty-masked Tinamou mapress.com/zt/article/v... #Ornithology @tetzoo.bsky.social đŸȘ¶

4 months ago 314 96 9 15
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LorMe: a streamlined and interoperable R framework for end-to-end microbiome analysis www.biorxiv.org/content/10.1... #Rstats đŸ§ŹđŸ–„ïžđŸ§Ș github.com/wangnq111/Lo...

4 months ago 8 5 1 0
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Ensembl 2026 Abstract. The Ensembl project (https://www.ensembl.org) is a public and open resource providing access to genomes, annotations, high-quality tools, and met

Our Ensembl 2026 paper is out!
Learn about 1,900+ new genomes, expanded pangenome support, new regulation interfaces, and what’s coming in our 2026 releases.
doi.org/10.1093/nar/gkaf1239

4 months ago 13 9 0 1
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L’ARN d’un mammouth laineux conservĂ© dans le pergĂ©lisol refait surface aprĂšs 40 000 ans Pour la premiĂšre fois, des fragments d’ARN ont Ă©tĂ© extraits et caractĂ©risĂ©s dans des carcasses de mammouths prĂ©servĂ©es dans le nord-est sibĂ©rien. Une avancĂ©e qui Ă©largit considĂ©rablement le champ de l...

AccĂ©der Ă  l’expression des gĂšnes d’un mammouth vieux de prĂšs de 40 000 ans : c’était inimaginable.
L’ARN de Yuka raconte pourtant l’activitĂ© d’un muscle figĂ© dans le pergĂ©lisol. Une plongĂ©e rare dans la biologie du passĂ©.
www.lemonde.fr/realites-bio...
#paleogenetique #paleobiologie #paleontologie

4 months ago 12 7 1 0
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ORKCA, un projet de rĂ©ensauvagement africain d’une ampleur inĂ©dite Au cours du siĂšcle dernier, la vie sauvage dans le sud de la Namibie a chutĂ© de 90%. Aucune autre rĂ©gion de l’Afrique sub-saharienne n’a connu autant d’extinctions, et l’on ne compte plus que 30 giraf...

www.lemonde.fr/perspectives...

4 months ago 0 0 0 0
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New in #Systematic_Biology, syaf082 #OpenAccess
"PhyloCNN: Improving tree representation and neural network architecture for deep learning from trees in phylodynamics and..."
Perez, M.F., & Gascuel, O. @isyeb.mnhn.fr
#tree_models #diversification #HIV #primates
âžĄïž academic.oup.com/sysbio/artic...

4 months ago 0 2 1 0
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PhyloWeaver – Interactive phylogenetic tree editor Edit and visualize phylogenetic trees directly in your browser. PhyloWeaver lets you interactively rearrange tree topologies and export high-quality figures for publications and presentations.

I’ve released a tool to sketch and edit phylogenetic trees!
yawak.jp/PhyloWeaver/

Load a Newick file and intuitively add/remove/resize branches.
Useful for quick conceptual trees, extracting subtrees, or turning ideas into Newick.

5 months ago 145 74 4 1
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Philippe Taquet, chasseur de dinosaures et ancien directeur du MusĂ©um national d’histoire naturelle, est mort DestinĂ© Ă  reprendre l’industrie textile familiale, cet esprit libre a prĂ©fĂ©rĂ© la vie de chercheur d’os, dĂ©couvrant plusieurs espĂšces d’animaux disparus, tout en menant une carriĂšre institutionnelle de...

www.lemonde.fr/disparitions...

5 months ago 0 1 0 0
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NEW pub in @science.org đŸ„ł

Is it sponges (panels A & B) or comb jellies (C & D) that root the animal tree of life?

For over 15 years, #phylogenomic studies have been divided.

We provide new evidence suggesting that...

🔗: www.science.org/doi/10.1126/...

5 months ago 284 130 14 30
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Phylogenomic Discordance: Patterns, Processes, and Solutions Phylogenomics, the study of evolutionary relationships using genomic data, has revolutionized our understanding of the Tree of Life. As a field, phylogenomics h

If you're interested in understanding discordance in phylogenomic analyses, the @evojlinnsoc.bsky.social's special issue 'Phylogenomic Discordance: Patterns, Processes, and Solutions' is for you!

tinyurl.com/v2eces3s

I'll be sharing a few articles a week until we're through the issue! (1/n)đŸ§Ș

6 months ago 27 15 1 4
Faces of different guenon species to show their morphological differences

Faces of different guenon species to show their morphological differences

If you like genomics, speciation, and primates, this PhD position is for you! Unraveling the genomic architecture of speciation and gene flow in guenons, a diverse group of African monkeys. Funding through DTP. Do reach out with questions! #genomics #genome_assembly
evol.mcmaster.ca/brian/evoldi...

5 months ago 30 30 0 1
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A new era in natural history publishing begins. 🐱✹

Introducing the Handbook of the Reptiles of the World!

5 months ago 7 4 1 1
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My lab is hiring a 2-yr hummingbird evolution and genomics postdoc and a 1-yr salaried research and lab tech. Both with full U. Wyoming benefits. Please spread the word! Info below. Best consideration date Nov 1, start dates early Spring 2026.

6 months ago 96 85 0 5
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And then there were none: Australia’s only shrew declared extinct The tally of Australian mammals extinct since 1788 is now 39 species – far more than for any other country

As I argue in #PlatypusMatters, Australia has the world's best mammals, but is sadly the worst place on Earth to be a mammal, with the planet's worst #extinction rate.
The Christmas Island shrew is now the latest species to be officially declared extinct.
www.theguardian.com/environment/...

6 months ago 104 50 4 4