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Posts by Ben Engel

This is super impressive and interesting #TeamTomo work by @carter-lab.bsky.social. Congrats everyone!! πŸ§ͺ 🧢🧬

1 week ago 29 4 0 0

Neat! Now if only we could get rid of all the surface ice chunks that land on our finished lamellae en route from our Aquilos to Titan 🧊😭 (yeah, yeah I know... glove box... or direct vacuum transfer...)

2 weeks ago 2 0 1 0
GitHub - Phaips/aretomo3torelion5 Contribute to Phaips/aretomo3torelion5 development by creating an account on GitHub.

#TeamTomo if you want to use CTF-corrected 3D subtomos from AreTomo3 in RELION v.5.1 you can use this updated script:

github.com/Phaips/aretomo3torelion5

2 weeks ago 34 9 0 0

Before knowing anything else about this, I am excited because prediction of stoichometry is also an implicit prediction of allostery.

2 weeks ago 7 1 0 0

New protein complex stoichiometry prediction tool from talent PhD student @daniil-litvinov.bsky.social, check out the thread below!

2 weeks ago 9 5 0 0

Check out this awesome work from @daniil-litvinov.bsky.social: Protein complex stoichiometry prediction (both homomers and heteromers) from sequence, with some nice ablations showing what makes the difference!

2 weeks ago 13 3 0 0

Here’s the link to Daniil’s thread 🧡 explaining why Stoic is so cool 😎πŸ§ͺ #AI #ProteinPrediction

bsky.app/profile/dani...

2 weeks ago 5 3 0 0

Stoic 🦾 from our shared student @daniil-litvinov.bsky.social predicts protein complex stoichiometry. A fun collab with @ninjani.bsky.social @torstenschwede.bsky.social - this #AI adventure beyond our core #CryoET methods was made possible by the @biozentrum.unibas.ch PhD Fellowship Program! πŸ§ͺ 🧢🧬

2 weeks ago 24 7 1 0

started using --𝐬𝐒𝐠𝐦𝐚_𝐚𝐧𝐠 πŸ‘ in RELION5 Refine3D and all of a sudden every subtomogram average goes to high resolution 🀯
#TeamTomo

3 weeks ago 34 8 2 0

This is a proud and exciting moment for me. Manon continues to redefine our understanding of pyrenoid biology, as she pushes the frontiers of #TeamTomo straight into the natural world around us πŸŒπŸŒŠπŸŒΎπŸ”¬

Her new group at @gmivienna.bsky.social will explore fresh and impactful questions. Check it out! πŸ§ͺπŸ‘©β€πŸ”¬

3 weeks ago 33 6 1 0
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Exciting opportunity to work in a lab that’s pushing the boundaries of environmental sampling and work with an amazing scientist!!! πŸ‘©β€πŸ”¬πŸ”¬

3 weeks ago 10 2 0 0

You want to work on carbon concentration mechanisms in algae πŸ«‘? Go work with my (soon-to-be-former) colleague
@manondemulder.bsky.social in Vienna @gmivienna.bsky.social !
Cryo-ET πŸ”¬ and funky bugs 🦠

#CryoET #CryoEM

3 weeks ago 8 1 0 0

I mean Vienna is not a bad place to be, but working and building and expanding and Cryo-ETing with @manondemulder.bsky.social can only make it a billion time better....

3 weeks ago 22 2 1 0

A bit late to the party- but this is one of the finest papers I have read in years. It is both super cool science, and does the near impossible in our field: grounding insights about the evolution of molecular mechanism in the ecological arena in which they (presumably) arose. It's a masterpiece.

1 month ago 39 4 2 1

#TeamTomo is in the museum #SciArt πŸ§ͺ 🎨

4 weeks ago 16 1 0 0

So it turns out that chromatin in archaea takes the hellish form of a Lovecraftian tube worm πŸͺ±πŸ”₯

Love it! Thanks for the nightmare-fuel! 😱

#ArchaeaSky @dodonova-sveta.bsky.social πŸ§ͺ

1 month ago 48 9 3 0
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@embl.org at its best: collaborative, open, transformative, and just the right amount of crazy. Dreaming of mechanistic cell biology *in the natural environment*? Dream no more, rent the AML.

www.biorxiv.org/content/10.6...

www.youtube.com/watch?v=jepb...

#WeFreezeOnTheBeach #ProtistsOnSky 🦠🌍πŸ§ͺ

1 month ago 87 31 3 2

So one day, I walk into our lab and @computingcaitie.bsky.social & @abimoye.bsky.social are carying eyeballs around everywhere πŸ‘€. Thanks for the eye-opening collaboration! (literally, ha!) πŸ§ͺ

1 month ago 18 2 1 0
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Great to see our paper on light-intensity dependent swimming patterns in #Chlamydomonas out now in Phys Rev Lett. as an Editors' suggestion! With a nice commentary by @philipcball.bsky.social.

Chlamy actively modulate the beat planes of their #cilia!
journals.aps.org/prl/abstract... #protistsonsky

1 month ago 74 24 1 1
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Haha, I am notorious for my strong feelings on segmentation colors 🌈🎨 πŸ§ͺ

But did we pick the exact right shade of pink? Maybe we should try five more? πŸ’•

Pretty figure incoming @lowlab.bsky.social πŸ€—

1 month ago 6 0 2 0

Histones in archaea, you say? Check out this new paper from @dodonova-sveta.bsky.social @embl.org 😁 πŸ§ͺ

bsky.app/profile/dodo...

1 month ago 4 0 0 0
Preview
Microtubules in Asgard archaea Microtubules are a hallmark of eukaryotes. Archaeal and bacterial homologs of tubulins typically form homopolymers and non-tubular superstructures. Th…

It's very cool! I already teach this awesome study from @florianwollweber.bsky.social & @pilhoferlab.bsky.social in my first-year cell bio class at the @biozentrum.unibas.ch

#ArchaeaSky #TeamTomo πŸ§ͺ

www.sciencedirect.com/science/arti...

1 month ago 6 1 0 0

Very cool environmental #CryoET. This is an exciting frontier for #TeamTomo πŸ§ͺ 🌍

1 month ago 11 0 0 0

I agree. Grandstanding without putting more money in the pot πŸ’°. Funding is tighter than ever this year, even in SwitzerlandπŸ‡¨πŸ‡­ …the @snsf.ch is taking a big hit 😣

1 month ago 2 0 0 0

Thanks Khaled 🌱😊

1 month ago 2 0 0 0

Chloroplast-encoded small subunit extensions reshape the Chlamydomonas chlororibosome www.biorxiv.org/content/10.64898/2026.02.07.704542v1 #cryoEM

1 month ago 8 4 0 0

This is absolutely gorgeous work from @helenfoster.bsky.social, @margotriggi.bsky.social, @gaiapigino.bsky.social and colleagues 🀩

#Chlamy cilia never cease to amaze!

1 month ago 10 3 1 0
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At long last, the Chlamy chloroplast ribosome hat 🎩 (now renamed the arm πŸ’ͺ) is here to say helloπŸ‘‹! We first spotted this extended structure in green algae a decade ago, and @florentwaltz.bsky.social did beautiful work bringing it into focus! #CryoEM ❄️ #TeamTomo πŸ”¬ #PlantScience 🌾 #ProtistsOnSky πŸ§ͺ

1 month ago 50 11 0 0
Hot Topic Conference Support for an "Eduard Strasburger Hot Topic Conference" for DBG's members

For #ECR’s:

DBG’s Hot Tpoic Workshop
on Cryo-Electron Tomography + FIB-milling

13 – 15 April 2026
In @cellarchlab.com 's lab @biozentrum.unibas.ch

Organised by @tamb-o.bsky.social, Karen Zinzius, @fannyleblanc.bsky.social

Details: www.deutsche-botanische-gesellschaft.de/en/about-us/...

2 months ago 11 8 0 1

Thanks Johann! Big congrats on your beautiful work as well. Really jaw-dropping #CryoET!! 🀩 I agree there are some cool parallels between the systems πŸ€“ πŸ§ͺ

2 months ago 4 0 1 0