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Posts by John Burke

Proud to share the yeast telomerase structure, led by the talented @hongmiaohu.bsky.social in collaboration with the Wellinger and Chartrand labs. Discovered 37 years ago and took us nearly 7 years but totally worth the wait 😍.
www.science.org/doi/10.1126/...
www.youtube.com/watch?v=gFE4...

3 weeks ago 203 74 9 2
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Proposals

I am so excited to co-organize the scientific program for ASBMB 2027 together with Amy Palmer @amypalmerzinc.bsky.social! Please join us in beautiful Boston April 3-6, 2027.

Interested in organizing an ASBMB mini-symposia or workshop? Submit your proposals here!:

www.asbmb.org/annual-meeti...

1 month ago 8 5 0 0
Phospholipids in Aging and Disease. Explore breakthroughs in phospholipid research, membrane biology, and aging at this leading scientific conference.

Beautiful desert views. Beautiful membrane biology.

Join us for the #FASEB Phospholipids in Aging and Disease SRC in Arizona, July 26–30 2026. Registration is now open!

So much better than a Lipid Droplets conference. Also, we're co-located with FASEB Lipid Droplets 😜

1 month ago 15 6 1 1
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Distinct impact of PI(4)P flux on PI(4,5)P2 steady states and oscillations | PNAS Plasma membrane (PM) phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2] regulates indispensable processes such as exocytosis, endocytosis, and actin...

A fascinating look at the frankly bonkers, still-mysterious relationship between master membrane regulator PIP2 and its precursor. Another classic from Min Wu's lab!

1 month ago 21 7 1 0
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The Lipid Interactome: an interactive and open access platform for exploring cellular lipid–protein interactions AbstractSummary. Lipid–protein interactions play essential roles in cellular signaling and membrane dynamics, yet their systematic characterization has lon


Our paper on The Lipid Interactome is now published, and the database is open:

lipidinteractome.org

@ohsummi.bsky.social @ohsunews.bsky.social
@nadlerlab.bsky.social @jeremybaskin.bsky.social

Please RT to spread the word.

doi.org/10.1093/bioi...

1 month ago 31 13 1 0
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cPLA2α targeting to exosomes connects nuclear deformation to LTB4-signaling during neutrophil chemotaxis Nuclear squeezing triggers lipid signals that help neutrophils stay on course through tight spaces.

Another interesting example of how cPLA2 senses nuclear deformation and controls immune cell behaviour. Since the enzyme adsorbs to hydrophobic lipid packing defects, membrane tension and high positive curvature can have similar effects as membrane tension.
www.science.org/doi/10.1126/...

1 month ago 4 3 1 0
Research Group Leader Tenure Track - Structural Studies - LMB 2775 - Medical Research Council Location: Cambridge. Vacancy: Research Group Leader Tenure Track - Structural Studies - LMB 2775. Closing Date: 16/03/2026, 23:55

Please spread the word: the Structural Studies Division @mrclmb.bsky.social is looking for a new tenure-track, independent group leader with an exciting plan in any area of Structural (Molecular & Cell) biology, in discovery biology and/or methods development. 🥳

mrc.tal.net/vx/mobile-0/...

2 months ago 83 106 1 3
The GTPase activating protein Gyp6 binds Retromer and inactivates Rab7/Ypt7 to coordinate the formation of endosomal carriers The Retromer coat is conserved in all eukaryotes and is crucial for the correct intracellular sorting of many transmembrane receptors and lysosomal hydrolases. Retromer is an effector of the late endosomal small GTPase RAB7 and is also implicated in its inactivation required for proper endosomal maturation. Here, we explore the role of controlled GTP hydrolysis by the RAB7 ortholog Ypt7 in the formation of Retromer-coated membrane carriers in yeast. Proximity labelling and genetic ablation identify the GTPase Activating Protein (GAP) Gyp6 as a critical regulator of Ypt7 activity in the context or Retromer. Structural studies show that Retromer recruits Gyp6 through its Vps29 subunit, which recognises a specific PL motif and a secondary binding site in the C-terminal domain of Gyp6. This interaction does not occur with other yeast GAPs. Ablation of the Gyp6-Retromer interface or the catalytic activity of Gyp6 leads to the accumulation of tubular structures on endo-lysosomal compartments and to increased association of Ypt7 with Retromer and its cargo Vps10. These results support a model in which Gyp6 controls the switch from Ypt7-dependent Retromer coat assembly and cargo collection to the departure of the carrier through membrane fission and uncoating. ### Competing Interest Statement The authors have declared no competing interest. National Health and Medical Research Council, https://ror.org/011kf5r70, APP2016410 Swiss National Science Foundation, https://ror.org/00yjd3n13, 31003A_179306, 310030_204713, 10.006.083

Do you want to know more about how Retromer regulates Rab7 activity in yeast? Of course you do. Check out the new collaboration with Andreas Mayer with work led by Catarina Alves and Kevin Chen.

2 months ago 20 10 0 0
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Excited to share our first collaborative paper of the year- a review on the emerging roles of lipids in flavivirus infection, now published in @cp-trendsmicrobiol.bsky.social. Congrats to Judah (postdoc) for spearheading the work!

@ohsunews.bsky.social

www.sciencedirect.com/science/arti...

3 months ago 9 5 1 0
The Government of Canada introduces new programs for international researchers - Canada.ca

Have you ever thought about coming to Canada as a researcher? See new programs for established PIs to move to the great north. If you have any questions about possibilities at UVic let me know www.canada.ca/en/impact-pl...

4 months ago 1 0 0 0
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A proximity map of RAB GTPases delineates roles for RAB14 in EARP complex and UHRF1BP1 endosomal recruitments Communications Biology - Proximity labeling proteomics of RAB GTPases identifies an array of neighboring RAB proteins. Functional validation studies reveal links between RAB25 and DENND6A, or...

It is a nice way to end the week: our improved RAB GTPase BioID map now online! www.nature.com/articles/s42... We hope it will be useful to the community, and we're happy to share any reagents!

4 months ago 36 10 5 1
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Structural basis for the recruitment and selective phosphorylation of Akt by mTORC2 The mTOR protein kinase forms two multiprotein complexes, mTORC1 and mTORC2, that function in distinct signaling pathways. mTORC1 is regulated by nutrients, and mTORC2 is a central node in phosphoinos...

www.science.org/doi/10.1126/...

4 months ago 7 4 0 0
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Design, Synthesis, and Biological Evaluation of Mono- and Diamino-Substituted Squaramide Derivatives as Potent Inhibitors of Mycobacterial Adenosine Triphosphate (ATP) Synthase Amides of squaric acid are new drug candidates with activity against mycobacteria. Like the approved drug bedaquiline, these compounds achieve efficacy by inhibiting mycobacterial ATP synthase. Howeve...

Exciting collab with Paul Palme, Peter Imming, & Adrian Richter!
Guided by @courbongautier.bsky.social's structure of myco ATP synthase bound to a squaramide, they have made SQAs that are less toxic, more potent, more stable than AstraZeneca's SQ31f
#MedChem #TB #NTM
pubs.acs.org/doi/full/10....

4 months ago 30 12 1 0

And the saga continues! Our collaborative work with outstanding Justin Korfhage & Thomas Melia’s lab in PNAS shows that ATG2A transfers triglycerides and does so bidirectionally! An exciting twist in our understanding of lipid transport.
Definitely worth a deep read:
www.pnas.org/doi/10.1073/...

4 months ago 31 18 0 0

Chemical proteomics decrypts the kinases that shape the dynamic human phosphoproteome www.biorxiv.org/content/10.1101/2025.11....

5 months ago 14 8 0 1

Thanks to @alextoker.bsky.social for the motivation to submit this to JBC @asbmbjournals.bsky.social , a great journal, with this being one of the most straightforward and useful manuscript review processes I have gone through in a while

5 months ago 3 2 0 0

The students working on this were exceptional. Sushant just defended his PhD, and is on the biotech job market with exceptional skills in HDX-MS, protein biophysics, and biochemical assays, with Alex defending in about 15 months looking for cryo EM postdocs. Keep an eye out for their applications!

5 months ago 2 0 1 0

This was a fun effort involving the Cobb lab for nanobody identification, the Hansen lab for smTIRF, and the Balla lab for cellular assays. This nanobody will be a great way to target selectively TTC7B containing PI4K complexes. We are happy to share, with the sequence in the supplementary as well

5 months ago 1 0 1 0
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Finally in collaboration with Scott Hansen's lab we showed this nanobody blocked EFR3 mediated membrane recruitment using his single molecule TIRF approach, and with Tamas Balla's lab showed this nanobody blocked EFR3 mediated PM recruitment in cells

5 months ago 0 0 1 0
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This nanobody clearly blocked efr3 recruitment in a dose dependent fashion

5 months ago 0 0 1 0

We specifically wanted this TTC7B selective nanobody to block the ability to bind EFR3, as this is the critical factor in PI4KA plasma membrane recruitment. The cryo EM structure showed a clear steric block of EFR3 binding (based on Sushant and Alex's structure from Science Advances last year)

5 months ago 0 0 1 0
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Sushant and Damilola in my group were running the BLI instrument nonstop to generate all of these curves. Alex was able to solve the cryo EM structure of this nanobody bound to PI4KA-TTC7B

5 months ago 0 1 2 0
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This is important as diseases are caused by hyperactivation of PI4KA, but complete loss is toxic. Therefore we reasoned that we might be able to selectively target unique PI4K regulatory complexes. We developed a nanobody that was highly TTC7B selective

5 months ago 0 0 1 0
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We fully characterised all possible regulatory complexes that can form between all 6 possible combinations of PI4KA regulatory complexes containing EFR3, TTC7 and FAM126 isoforoms

5 months ago 0 0 1 0

Cool new paper (www.jbc.org/article/S002... from my lab spearheaded by graduate students Sushant @sushantsuresh.bsky.social and Alex @alexlouiseshaw.bsky.social . This was a very cool collaboration with the Scott Hansen, Jennifer Cobb, Tamas Balla labs

5 months ago 13 7 2 1
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Discovery, Optimization, and Anticancer Activity of Lipid-Competitive Pleckstrin Homology Domain-Containing Family A Inhibitors Phosphoinositide signaling is a major cellular mechanism controlling cancer cell viability, proliferation, and survival. Yet, inhibition of lipid kinases that produce oncogenic phosphoinositides has afforded only a limited number of efficacious drugs attributed in large part to on-target toxicity resulting from the pleiotropic effects of these signaling lipids. Targeting the specific phosphoinositide effector pathways via competitive inhibitors of phosphoinositide-recognizing pleckstrin homology (PH) domains represents a relatively unexplored means to achieve greater specificity. Herein, we present the discovery from in silico screening, structure–activity relationship (SAR) optimization, and cellular characterization of novel phosphoinositide-competitive inhibitors of the pleckstrin homology domain-containing A (PLEKHA) family. These compounds induce cytotoxic effects in BRAF and NRAS mutant melanoma cells, consistent with on-target inhibition, and the most potent compound is activated by endogenous esterase activity, suggesting that prodrug esters represent a viable strategy for targeting the phosphoinositide-binding pockets of the PLEKHA family of PH domains.

A while back we found that the lipid-binding protein PLEKHA4 boosts Wnt/β-catenin signaling and drives melanoma growth in vivo. Now, we (Nathan Frederick) identify small-molecule inhibitors of PLEKHA4 & related proteins with anticancer activity in vitro! pubs.acs.org/doi/10.1021/....

6 months ago 26 9 0 2

Just spent an hour trying to get chatgpt to write a custom zotero script for me. Not super worried about AGI coming anytime soon...

6 months ago 0 0 0 0

Very cool paper, nice work!

6 months ago 0 0 1 0
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Great visit to the university of torino for a seminar, fun science and great food with good friends

6 months ago 2 0 0 0
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This was part of a special issue to celebrate 50 years since the landmark review from Bob Michell on phosphoinositide signalling. Looking forward to reading the full cohort of papers from this issue

7 months ago 0 0 0 0