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Posts by Aissam Ikmi

21st century dev bio at its best! I can't help but point out that not one but two Bruker microscopes (Acquifer IM, MuVi) were used for gentle&long term time lapse imaging of developing Nematostella here. No need to mount your invertebrate (cnidaria, planaria, crustaceans), we can do the time lapse!

3 days ago 4 1 0 0

Now published. Congrats to Soham and all co-authors! www.science.org/doi/10.1126/....
@embl.org

3 days ago 52 20 2 1
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Deciphering mechanical determinants of morphological evolution A comparative analysis of cnidarian larval morphogenesis combined with active surface theory identifies a set of mesoscale mechanical modules that predict species-specific shapes. Manipulating these m...

Congratulations Guillaume #Salbreux and collaborator @aikmi.bsky.social groups for your latest publication in @cellcellpress.bsky.social: Deciphering #mechanical determinants of morphological #evolution @genevunige.bsky.social @sciencesunige.bsky.social #UNIGE
👉 www.cell.com/cell/fulltex...

4 weeks ago 7 4 0 0

Thanks, Elias!

4 weeks ago 1 0 0 0

Gracias, hermano!

4 weeks ago 1 0 0 0

A press release on our latest work on shape diversity in cnidarians. @embl.org

4 weeks ago 11 1 0 0
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Hello epithelia enthusiasts!

I’m @inesfournon.bsky.social and I study epithelial mechanics in sea anemones 🪼

Did you know epithelial cell extrusion had never been described outside bilaterian animals before? Well… not anymore 👀

Read ⬇️🧵1/9

1 month ago 53 23 1 3
Evolution of monoamine reception and its role in cellular contractility.

Evolution of monoamine reception and its role in cellular contractility.

How do #sponges coordinate their bodies despite lacking neurons and true muscles?

We show that sponges use monoamines to control water flow in their canals — reminiscent of how adrenaline regulates blood vessels.

My PhD story, now on BioRxiv:
www.biorxiv.org/content/10.6...
#Evolution

2 months ago 66 22 3 4
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Credit: Mylan Ansel

Credit: Mylan Ansel

Expansion microscopy of a loricate choanoflagellate, generated by Mylan Ansel in our lab 🤩

(yes, the lorica expands. No, we don't understand how either)

1 month ago 163 23 9 3

We’re looking for a new team member! 🚀
Only 3 more weeks to apply to the fantastic Vienna BioCenter PhD program

1 month ago 16 17 0 0

Thanks, Suhrid!

1 month ago 1 0 0 0

🔥Exciting new paper from the Ikmi group @embl.org! The authors identified a set of mesoscale mechanical modules that can be used to predict species-specific shapes by combining a comparative analysis of cnidarian larval morphogenesis with active surface theory #morphogenesis #cnidaria

1 month ago 7 3 0 0
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Deciphering mechanical determinants of morphological evolution A comparative analysis of cnidarian larval morphogenesis combined with active surface theory identifies a set of mesoscale mechanical modules that predict species-specific shapes. Manipulating these modules reprograms morphology, revealing how variation in tissue-scale mechanics underlies morphological diversity.

Now online! Deciphering mechanical determinants of morphological evolution

1 month ago 12 4 0 0

Thanks, Vlad!

1 month ago 1 0 0 0

Amazing to see this study finally out! Proud to have contributed to the active surface modelling of cnidaria morphogenesis across species and huge congrats to Richard, Nicolas, and all authors! #morphogenesis #activematter #nematicorder #evolution

1 month ago 20 2 1 0

Thanks, Arnaud!

1 month ago 0 0 0 0

Our study on shape diversity in cnidarians is now published. The final version includes extensive new data that substantially extend the original bioRxiv preprint. Congrats to everyone who contributed to this work! www.cell.com/cell/fulltex...
@embl.org

1 month ago 140 64 5 3
Interallelic cis-regulatory dominance promotes robustness and evolutionary innovation Dominance is a central principle of genetics, yet the mechanistic basis and the evolutionary consequences of dominance arising from cis-regulatory variation remain poorly understood. We examined the evolutionary trajectories of a pleiotropic developmental enhancer in Drosophila . A genotype–phenotype map between D. melanogaster and D. simulans enhancer sequences reveals extensive epistasis, and many homozygous evolutionary paths reduce transcriptional output. In heterozygotes, however, regulatory dominance masks variants that reduce gene expression, potentially relaxing evolutionary constraints. Using allele-specific reporters and imaging, we show that this dominance arises from interallelic interactions (also known as transvection) reinforced by transcriptional hubs. Importantly, this enhancer dominance is cell-type specific, raising the possibility that it conceals deleterious effects in essential tissues while revealing novel, ectopic activity in others. Interallelic regulatory hubs may therefore expand the range of mutational paths available to diploid genomes while preserving essential transcriptional output. ### Competing Interest Statement The authors have declared no competing interest.

New Preprint! When one enhancer allele changes another's regulatory output, is that bad? We found it could be a feature — interallelic cis-regulatory dominance buffers outputs AND enables evolutionary innovation. Two for one!

Led by @ottilie.bsky.social from @embl.org

doi: doi.org/10.64898/202...

1 month ago 40 13 2 0
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It's out! Happy to present ITEC, a semi supervised algorithm with an extremely low error rate that can track cells in files of any size (think Terabytes!). We used it in many organisms, including zebrafish, to study how organs form and linked it to gene expression www.biorxiv.org/content/10.6... +🧪

1 month ago 198 59 20 3

Cool! Phenotyping a land planarian begins.

4 months ago 2 0 1 0
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Ectopic head regeneration after nervous system ablation in a sea anemone Via genetic ablation of neurons, Mazloumi Gavgani et al. show that the nervous system is essential for defining axial polarity during whole-body regeneration in the sea anemone Nematostella vectensis.

Our paper on the role of neurons in Nematostella head regeneration is now out at @currentbiology.bsky.social Big thank you to all collaborators, it was a pleasure!

Ectopic head regeneration after nervous system ablation in a sea anemone: Current Biology www.cell.com/current-biol...

5 months ago 92 39 1 4
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Only a few days left for abstract submission at the brand new EMBO|EMBL Symposium Collectivity in living systems: emergence, function and evolution. We have stellar speakers in cell, animal collectives & beyond @priscaliberali.bsky.social @icouzin.bsky.social @ricardsole.bsky.social

Join us!

5 months ago 25 15 1 3
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Our Special Issue on Lifelong Development #LifelongDevSI is now complete!

Guest edited by Meri Huch and Mansi Srivastava, it contains 26 research and review-type articles.

On the cover: the dorsal vasculature of an adult zebrafish's first gill arch. See Preußner et al. doi.org/10.1242/dev....

5 months ago 22 6 1 1

Also in #LifelongDevSI :
▪️Editorial
▪️Hypothesis on phenotypic plasticity
▪️2 interviews with our guest editors
▪️3 Reviews
▪️17 Research Articles and Reports
▪️3 Techniques and Resources

Full table of content: journals.biologists.com/dev/issue/15...

5 months ago 2 1 0 0

Great having you at @embl.org, Michel! Inspiring science, great discussions, and a fantastic perspective on quantitative evo-devo.

5 months ago 3 0 0 0

Had the pleasure of working with @mohannad-dardiry.bsky.social to rethink what it means to develop for life. Many thanks to @dev-journal.bsky.social! @embl.org #LifelongDevSI

5 months ago 17 8 0 1
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Latest from ours: www.cell.com/cell-reports...

This is two stories in one: a case study/cautionary tale on developing genetic tools in new organisms, and the first hint at a gene regulatory network for choanoflagellate multicellular development (which turn out to involve a Hippo/YAP/ECM loop!) A 🧵

6 months ago 244 101 10 10
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Finally, the excellent postdoc work of Emmanuel Haillot is out, where he dissected the integration of Wnt, MAPK and Notch signaling in defining mesoderm and endoderm identities in the diploblast Nematostella. Strikingly similar to sea urchins. www.nature.com/articles/s41...

7 months ago 56 22 4 1

Want to help us image and understand those incredible samples Felix just collected at UBC - and many more?

2 more days to apply!

embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

#ExM #PlanetaryCellBiology

🧪🧬🔬🌍🌱🦠

7 months ago 20 17 1 0