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Posts by Dr. DY Zheng

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New preprint from our lab: enforcing the dormancy gatekeeper ZFP281 can provide long‑term, even lifelong, protection from HER2‑driven breast cancer metastasis by uncoupling dissemination from outgrowth and locking DCCs into dormancy.www.biorxiv.org/content/10.64898/2026.04...

5 days ago 2 1 1 0

Very exciting findings from a multi-lab collaboration led by @jaguirreghisolab.bsky.social grateful for the opportunity to contribute a bit of our expertise in transcriptome analysis

5 days ago 2 1 0 0
Understanding the Role of Functional Noncoding Variation in Human Diseases with Lessons from Immunity The advent of next-generation sequencing has expanded our understanding of the genotypic, pathobiological, and phenotypic spectrum of human disease, helping to inform more personalized patient care. Current clinical guidelines are prompting the generation of large volumes of clinical diagnostic genome sequencing data, but we remain unable to interpret variants found in the noncoding 98.5% of sequencing data. In this review, we discuss the known and emerging mechanisms by which noncoding variants cause human disease. Through the lens of immunity, we integrate insights from population genetics, evolutionary and functional genomics, and in silico strategies to propose a framework for identifying and characterizing potential disease-relevant noncoding variants with regulatory impact on gene expression. By tackling the assessment of this vast black box of missing genetic contributions to disease, we hope to improve diagnostic yields and clinical management for more unsolved patients.

Grateful to have the opportunity to publish this review with Xiao Peng in Annual Reviews. We set out the challenges and opportunities to use information in rare disease diagnostics from the 98.8% of the human genome that does not encode genes.

www.annualreviews.org/content/jour...

1 week ago 12 6 1 0
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Genetic predictors of GLP1 receptor agonist weight loss and side effects - Nature Identification of genetic variants associated with the efficacy and side effects of GLP1 medications could underpin development of precision medicine approaches in the treatment of obesity.

Were you inspired by our paper on the genetics of GLP-1 drug response? www.nature.com/articles/s41...

Want to make impactful discoveries with the world's best genetic dataset? We're hiring!

StatGen: tinyurl.com/ys4mvhej
Risk Prediction: tinyurl.com/psamt294
Data Products: tinyurl.com/2ff7eavb

1 week ago 9 7 0 0
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News | Explore Cutting-Edge Gene Editing Technologies — PerturbAI Discover the latest updates and breakthroughs in gene editing with PerturbAI's news on CRISPR innovations and collaborations. Stay informed today.

Introducing PerturbAI.
Today we announced our emergence from stealth with the release of the world’s largest in vivo CRISPR data engine, interrogating thousands of genetic perturbations across 8 million cells throughout the whole brain.
Read More: perturb.ai/news

1 month ago 4 2 1 1
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Why do women account for nearly 2/3rd of all cases of Alzheimer's disease? A new, thorough review, open-access, on its origins in midlife.
@jci.org
www.jci.org/articles/vie...

1 month ago 238 81 11 4
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Gene regulatory networks: from correlative models to causal explanations Nature Reviews Genetics - In this Perspective, Maizels and Briscoe discuss the limitations of current models of gene regulatory networks and outline solutions to harness data abundance without...

New Perspective form Rory Maizels & me: "Gene regulatory networks: from correlative models to causal explanations"

Gene regulatory networks are supposed to give us mechanistic explanations of development, so why are we drowning in 'hairballs' of statistical correlations?

rdcu.be/e7zx7

1 month ago 121 46 2 2

CellWhisperer can now run on your laptop. Talk to your cells! And check out our paper: www.nature.com/articles/s41...

1 month ago 7 3 0 0
Albert Einstein College of Medicine | Medical Education | Biomedical Research

Please share: we're hiring a new tenure-track faculty member to our Department of Genetics at Albert Einstein College of Medicine.

faculty-einstein.icims.com/jobs/17847/a...

2 months ago 27 47 1 1
Albert Einstein College of Medicine hiring Postdoctoral position studying functional non-coding variants in neurodevelopmental disorders, Bronx, New York City, USA c in New York City Metropolitan Area... Posted 9:40:20 PM. A postdoctoral fellow position is open with 2 years of funding from the Simons Foundation Autism…See this and similar jobs on LinkedIn.

Please share this with your network: Postdoctoral position available in my group.

www.linkedin.com/jobs/view/43...

2 months ago 4 12 1 1
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Cool work. Always like rigorous methods with positive and negative controls

2 months ago 1 0 0 0
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News from central Jersey: I'm running to represent New Jersey's 12th Congressional District.

By entering the fray, I hope to bring ideas of repairing our frayed republic. Not only to defend it in 2026, but to build something stronger, for generations to come!

samwang.substack.com/p/entering-t...

2 months ago 531 151 33 34

The link doesn’t seem to work on phone, can’t open the website.

2 months ago 1 0 1 0

This was never really the case. We have known since the 1960s that some of our non-coding DNA has a crucial role in gene regulation: turning the expression of coding genes on & off. It’s been clear for decades that the regulatory DNA is at least comparable in proportion to the protein-coding DNA. /5

2 months ago 39 8 1 0
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Gonadal and sex chromosomal contributions to sex differences in mammalian brain organization www.biorxiv.org/content/10.6... - really nice work from Armin Raznahan @bogglerapture.bsky.social and colleagues

3 months ago 21 7 2 0

Very good. I have always been wondering why NC doesn’t do it

4 months ago 1 0 0 0

We identified a novel XIST transcript(s) that is expressed in male in a very specific cell type, Schwann cells, and it has non-XCI related functions. Would like to talk if anyone works on this cell type or XIST😀.

4 months ago 1 0 0 0
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Transcription and potential functions of a novel XIST isoform in male peripheral glia An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms

XIST plays a key role in X-chromosome inactivation (XCI) and thought to be transcribed exclusively from the inactive X in female (XX). In this new study led by Kevin O’Leary, a talented MSTP student, we find both views need to be updated. @genomeresearch.bsky.social doi.org/10.1101/gr.2...

4 months ago 3 0 1 0
Surprising spring flowers in a cold winter day

Surprising spring flowers in a cold winter day

Don’t know what to make of this. The temp is below 20F, but this spring flower??

4 months ago 0 0 0 0
AI created cartoon mouse doing research

AI created cartoon mouse doing research

In prep for a talk, I asked DALL•E to make an image of “mouse developing heart”. It became more creative than I expected and got me this 😂

5 months ago 1 0 0 0
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This week, we published in @science.org an article outlining the current ethical and societal implications of research involving human neural #organoids and #assembloids, their transplantation, and highlighted potential next steps.

5 months ago 39 10 2 0
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A phenotypic brain organoid atlas and biobank for neurodevelopmental disorders Wang and colleagues present a phenotypic brain organoid atlas for neurodevelopmental disorders, revealing disease-specific cellular and molecular alterations that illuminate NDD pathogenesis. Integrat...

New work by @gleesonlab.bsky.social & colleagues in @cp-cellstemcell.bsky.social
“A phenotypic brain organoid atlas and biobank for neurodevelopmental disorders” 🧪🧠🧫🧬

www.cell.com/cell-stem-ce...

5 months ago 7 3 0 0
A robot on a chair sits next to a patient against a backdrop of a medical report. Credit: mathisworks / DigitalVision Vectors / Getty Images

A robot on a chair sits next to a patient against a backdrop of a medical report. Credit: mathisworks / DigitalVision Vectors / Getty Images

🚨To celebrate #WorldMentalHealthDay, our October issue includes a Focus that examines the advances in computational psychiatry and the challenges of developing computational models to address mental health disorders. #mentalhealthresearch #Psychiatry

➡️ nature.com/collections/...

🧵(1/8)

6 months ago 16 7 2 1

Excited to have Mark from Yale visit us and speak in our AI seminar series tomorrow, co-sponsored by the new Data Science Institute at @einsteinmededu.bsky.social lots of to learn and catch up

6 months ago 0 0 0 0
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Fibroblast-Specific Loss of TGF-β Signaling Mediates Lipomatous Metaplasia in the Infarcted Heart | Circulation BACKGROUND: In patients surviving myocardial infarction, adipose tissue infiltration within the scar is a common pathological finding and has been suggested to contribute to dysfunction and arrhythmog...

www.ahajournals.org/doi/10.1161/...

6 months ago 0 0 0 0
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🚀 NY-CURES Launch — Championing State-Wide Investment in Science! 🚀

Our new coalition advocates for sustained public support of New York’s vibrant biomedical research ecosystem — creating cures, economic gains & strengthening communities.

Sign up. Stay informed. Join the movement: www.nycures.org/

7 months ago 47 55 4 6
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🚨 Excited to share the latest preprint form the lab ➡️https://tinyurl.com/32d3be9f

Here we tackle a long-standing chicken-or-egg 🐣🥚question in #autism and developmental neuroscience

➡️ Is excitation–inhibition (E:I) imbalance a "cause" or a "consequence" of #autism?

Check out what we found!
🧵1/n

7 months ago 64 34 1 5

Still like UMAP? Why stop at one when you can make lots of them. Then you may learn something new from them and if they represent your data well.

7 months ago 0 0 0 0
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PSA:
if you're not a mouse person you may enjoy knowing that mouse Sca1 (the hematopoiesis marker) is not encoded by Sca1 (spinocerebellar ataxia 1) but rather Ly6a.
I mean, OF COURSE it is. What else could it be?
I'm an hg38 person and below is a self-portrait while I was figuring this out.

7 months ago 7 1 2 0

“With these considerations, we expect to fund through the 4th percentile.”

There it is, in black and white, the destruction of cancer research in the US.

8 months ago 229 149 15 21