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Posts by KhongSam Chia

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New OA Article: "Membrane remodelling mediates lipopeptide-induced immunity in Arabidopsis" rdcu.be/feoNF

Lipid-driven mechanism for immune activation by a bacterial lipopeptide. Perception at the cell membrane leads to deformation, mechanosensing and early signalling. #PlantScience

1 day ago 19 12 1 0
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Genome Annotation / Genome annotation with Helixer / Hands-on: Genome annotation with Helixer Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control…

💡 #KnowledgeHighlight | Genome annotation with Helixer - @galaxyproject.bsky.social
tutorial
🔗 training.galaxyproject.org/training-mat...
Explore open-access training materials in the ERGA #KnowledgeHub ➡️ knowledge.erga-biodiversity.eu

#genome #annotation #helixer

1 day ago 5 3 0 1
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GitHub - RILAB/statements: Successful Job Applications and Grants Successful Job Applications and Grants. Contribute to RILAB/statements development by creating an account on GitHub.

That time of year again! If you'd like an example of job apps in academia or industry, here's a good resource. If you got a job in industry or academia in the last few years, please consider adding yours! github.com/RILAB/statem...

3 days ago 90 52 0 3

Pathogen-inducible expression of autoactive NLRs confers multi-pathogen resistance in tomato

www.biorxiv.org/content/10.1...

5 days ago 8 11 1 2
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1/8 🔥 New preprint dropped: Dynamic co-existence of bacteriophages and their hosts 🦠 in the Arabidopsis thaliana 🌱 phyllosphere
Work led by the indomitable @sheilaroitman.bsky.social‬
#plantscience #microbiome #holobiont
www.biorxiv.org/content/10.6...

5 days ago 77 45 4 2
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Genome–host association mapping reveals wheat pathogen genes involved in host specialization - Nature Plants This study introduces genome–host association (GHA), leveraging natural epidemics to map the genetic landscape of host adaptation in the pathogen Zymoseptoria tritici. Applied to 832 wheat fungal stra...

Thrilled to share our paper now out in Nature Plants 🎉
We developed a genome-host association (GHA) approach to study pathogen adaptation directly from field metadata by using the originating host cultivar as phenotype.

www.nature.com/articles/s41...

6 days ago 45 28 3 0
A card announcing the call for papers stating 'Special Issue: The Integrative Biology of Reproduction Guest Editors: Etya Amsalem, Tony D. Williams and Kathryn Wilsterman. Submission deadline: 30 June 2026' with the Journal of Experimental Biology logo and the logo for the Special Issue containing an egg cell surrounded by eight sperm cells. The eighth sperm, on the top right, is penetrating the egg.

A card announcing the call for papers stating 'Special Issue: The Integrative Biology of Reproduction Guest Editors: Etya Amsalem, Tony D. Williams and Kathryn Wilsterman. Submission deadline: 30 June 2026' with the Journal of Experimental Biology logo and the logo for the Special Issue containing an egg cell surrounded by eight sperm cells. The eighth sperm, on the top right, is penetrating the egg.

We are calling for Reviews, Commentaries or research papers for our upcoming Special Issue: The Integrative Biology of Reproduction, covering the entire reproductive process, from mate selection, mating and egg-laying or pregnancy through to parental care

bit.ly/3ZT42hY

2 weeks ago 5 5 0 0
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The final version of our Marchantia cell cycle paper is now published. A much improved version compared to the preprint. Cyclins, repressors, and more. Thanks to co-authors and reviewers. #PlantScience. academic.oup.com/plcell/advan...

1 week ago 51 24 6 1
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New paper from Departmental Group Leader Patience Chatukuta and her African Plant Genomics team highlighting the diversity of crop wild relatives in Zimbabwe.

1 week ago 2 1 0 0
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A national crop wild relative checklist for Zimbabwe reveals edible crop wild relative diversity of regional and global importance | Dr Patience Chatukuta 📢 Check out this checklist of crop wild relatives in Zimbabwe! 💡 Crop wild relatives are the untamed cousins of our cultivated crops. 📊 The checklist provides baseline data for crop improvement and...

Check out our paper on the diversity of crop wild relatives in Zimbabwe!

#CropWildRelatives #PlantScience #Biodiversity #Conservation #ClimateResilience #Zimbabwe

www.linkedin.com/posts/dr-pat...

1 week ago 5 4 0 1
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Angebot: Von Molekülen zu Organismen (Biologie) Tübingen | 23. April 2026, 10:15 | Max-Planck-Institut für Biologie, Tübingen, Tübingen mit Ines Müller

Das Max-Planck-Institut für Biologie Tübingen und das Friedrich-Miescher-Labor bieten am 23. April wieder Girls’Day an. Für Mädchen ab 9. Klasse. Infos & Anmeldung: www.girls-day.de/.oO/Show/max.... Noch Plätze frei – gern teilen!

1 week ago 2 2 0 0
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Research Associate/Research Fellow (Molecular Genetics and Functional Genomics) The School of Chemistry, Chemical Engineering and Biotechnology (CCEB) at NTU Singapore, in collaboration with Wageningen University & Research (WUR), is part of Singapore Indoor Farming System (S...

Research Associate/Research Fellow on the discovery of resistance genes with effectoromics, with a focus on genes that lead to resistant plants for indoor farming systems for Brassica. #scijobs @VivianneTwit ntu.wd3.myworkdayjobs.com/Careers/job/...

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AlphaFold 3 captures oligomeric states and interaction dynamics of MLO ion channels www.biorxiv.org/content/10.64898/2026.04...

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Gymnosperm FLS2 orthologues mediate conserved flg22 perception and divergent responses to flg22 variants www.biorxiv.org/content/10.64898/2026.04...

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The compartmentalized activity of a legume subtilase SBT12a allows symbiosome stabilization www.biorxiv.org/content/10.64898/2026.04...

1 week ago 14 5 0 0
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New pre-print from the lab! We show that the subtilase SBT12a is essential for symbiosome stabilization in Medicago. Using HUNTER proteomics, we even got some of its substrates. Have a look.
www.biorxiv.org/content/10.6...

1 week ago 55 34 3 3
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1/ BRAKER4 hatched!
The Earth BioGenome Project is on track to sequence ~1.5M eukaryotic species. Every one needs a structural annotation. No Perl monolith was going to survive that. So we rewrote BRAKER from the ground up. github.com/Gaius-August...

1 week ago 61 36 1 0
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Reconstructing plant beneficial bacterial consortia by integrating dilution-to-extinction microbiome perturbation with genome-resolved synthetic ecology www.biorxiv.org/content/10.64898/2026.04...

1 week ago 9 9 0 0
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BRAKER4 is about to hatch. It now also covers functional annotation for protein sequences... #genomeannotation

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Transition metal-triggered immunity via an Arabidopsis NLR pair www.biorxiv.org/content/10.64898/2026.04...

1 week ago 15 12 0 0
Various tissue cross-sections of Marchantia paleacea thalli and cartoon (top) showing site of cross-sections

Various tissue cross-sections of Marchantia paleacea thalli and cartoon (top) showing site of cross-sections

It's good to talk...💬

Yoda et al. show that #strigolactones are synthesised in #Marchantia paleacea basal ventral tissues & secreted into the rhizosphere to facilitate effective communication with #AMfungi

🔗 doi.org/10.1093/pcp/...

#PlantScience
#Phytohormones
#PlantMicrobeInteractions

3 weeks ago 10 5 0 0
A lineage-specific selective autophagy receptor module mediates P-body turnover Abdrakhmanov et al. identify a lineage-specific autophagy receptor module that mediates the selective recycling of P-bodies in the liverwort Marchantia polymorpha. The conserved decapping factors EDC4 and DCP1 link RNA granules to autophagy, and the liverwort receptor EDC4 can promote autophagy-dependent α-synuclein degradation in human cells.

just want to thank again @grandpahiro.bsky.social & @huguesrenault.bsky.social for saving us from an embarrassment: “We thank Hirofumi Nakagami and Hugues Renault for their feedback on not defining Marchantia polymorpha as an early land plant.” www.cell.com/developmenta...

1 week ago 42 12 4 1
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Preprint alert 🚨 (1/10) 🧵

𝘈𝘶𝘵𝘰𝘱𝘩𝘢𝘨𝘺 𝘪𝘴 𝘢 𝘱𝘢𝘳𝘢𝘥𝘰𝘹 𝘪𝘯 𝘱𝘭𝘢𝘯𝘵 𝘪𝘮𝘮𝘶𝘯𝘪𝘵𝘺:
It can promote resistance, susceptibility, or restrict cell death 🤯

So what is its actual role?

We show it acts as a spatial organizer of immunity across cell types 🌱🦠 #proteostasis

www.biorxiv.org/content/10.6...

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Very honored to be a recipient. Many thanks for all the support! Excited for more cool science to come! 🔬

@gso-forresearchers.bsky.social

1 week ago 16 3 0 0
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Genetic Diversity, Predictive Protein Structures, and Interaction Networks of Cysteine-Rich Receptor-Like Kinases in Arabidopsis thaliana | Computational and Structural Biotechnology Journal Cysteine-rich receptor-like kinases (CRKs) are a large subfamily of plant receptor-like kinases implicated in immunity and development, yet their ligands, interaction partners, and mechanistic roles r...

Genetic Diversity, Predictive Protein Structures, and Interaction Networks of Cysteine-Rich Receptor-Like Kinases in Arabidopsis thaliana | Computational and Structural Biotechnology Journal spj.science.org/doi/10.34133...

1 week ago 11 5 2 0
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Nutzpflanzenforscherin aus dem „Klaus Tschira Boost-Fund“ gefördert Die Pflanzenforscherin Dr. Eliza Loo, Arbeitsgruppenleiterin am Institut für Molekulare Physiologie an der Heinrich-Heine-Universität Düsseldorf (HHU), wird für die kommenden zwei Jahre für ein Projek...

Huge congrats to Dr. Eliza Loo! The associated MibiNet researcher has secured a "Klaus Tschira Boost Fund" grant to explore targeted programming of plant microbiomes. Fantastic news for @hhu.de and the MibiNet team!
#MibiNet #HHU
@elizaloopi.bsky.social
www.hhu.de/en/detail-re...

1 week ago 35 15 7 1

Great to see this paper in its final published form!

www.pnas.org/doi/10.1073/...

2 weeks ago 25 14 3 0
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Spatial organization of plant defense at the infection front www.biorxiv.org/content/10.64898/2026.04...

2 weeks ago 20 12 0 1

I will probably be hiring either a PhD or a Postdoc in the near future. If you are interested in deep biochemical history or molecular mechanisms of evolution please get in touch.

2 weeks ago 23 23 0 1
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What brown algae taught me about the importance of jumping genes for genome evolution

Behind the scenes!
go.nature.com/4bYY8BM

2 weeks ago 26 11 0 0