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Posts by Diego De Panis

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The #ERGA committees cover every step of the #genome generation pipeline, from sampling to communicating research results. They are #open to all members who wish to get involved:
www.erga-biodiversity.eu/community-co...

➡️ Choose your favorite, email them, and join today!

@ebpgenome.bsky.social

1 month ago 9 4 0 0

And it does not end there ... as we will continue our efforts through the #Biodiversity #Genomics #Europe PLUS (BGE+) project biodiversitygenomics.eu/2026/02/16/b...

1 month ago 17 4 0 0
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From Permits to Samples: Addressing Key Challenges for High‐Quality Reference Genome Generation in Europe High-quality reference genome assemblies have become essential for deepening our understanding of biodiversity, yet obtaining them for many species remains surprisingly challenging. Drawing on experi...

From the @ergabiodiv.bsky.social community & Sampling & Sample Processing (SSP) Committee onlinelibrary.wiley.com/doi/full/10....
Outputs like this are great examples of the bottom-up co-creation philosophy of ERGA actions - congratulations to the whole team! #biodiversity #genomics

2 months ago 7 5 0 0
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👉 Check out the ERGA Genome Report doi.org/10.3897/rio.....

🔎 Browse the living #openscience collection by @ergabiodiv.bsky.social: doi.org/10.3897/rio...., currently comprising 16 research publications!

2 months ago 3 2 1 0
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Seeing into Hi-C: How our scientific connectivity revealed the close connections in our DNA to be a work of art Scientific data can be beautiful. An example where the data itself have a particularly striking appearance even before any scientific meaning has been ascribed

I had the privilege to meet artist Mary Griffiths. Mary got inspired by Hi-C maps and over zooms we spoke about Hi-C maps, patterns and drawings. Mary’s Hi-C inspired art has been exhibited eg the Royal Academy. We wrote this piece about this art-science collaboration

pubs.aip.org/aip/bpr/arti...

2 months ago 31 10 1 0

Deutsches Wort des Tages: Sehnsucht

3 months ago 0 0 0 0
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Emotion semantics show both cultural variation and universal structure Analysis of the terms used for emotions across a sample of 2474 spoken languages reveals low similarity across cultures.

By mapping the meanings of the words used to communicate emotions across more than one-third of the planet’s spoken languages, a study in Science found that there is significant variation in how emotions are expressed across cultures. #ScienceMagArchives https://scim.ag/4pQGxBB

4 months ago 55 11 0 2
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What was the #ERGACommunity up to in 2025? The answer is: a lot! Head to our website for an overview of the main achievements and ongoing priorities across our community ➡️ www.erga-biodiversity.eu/post/erga-20...

#community #2025highlights #ERGA @ebpgenome.bsky.social @biogeneurope.bsky.social

4 months ago 12 5 1 0
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Genomics for Biodiversity Conference - from genomes to impact 29–31 October 2025Summary🗓️ Dates:  29 - 31 October 2025 (click to add to your agenda!)🔗 Online venue: ERGA YouTube ChannelWe are excited to announce the Genomics for Biodiversity Conference organised...

It’s almost time for the Genomics for Biodiversity Conference — happening next week!
🗓️ 29–31 October
💻 Fully online & free of charge
Find all the details, including the full programme 👇
www.erga-biodiversity.eu/post/genomic...

@biogeneurope.bsky.social @ebpgenome.bsky.social #genomics #biodiversity

6 months ago 15 11 1 1
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How to represent genomes in 3D?

In this paper (and video), we propose Geometric Diagrams of Genomes (GDG)—a visual grammar that aims at emulating the effect ribbon diagrams (Richardson et al 1981) had in protein structural biology. Time will tell.😅

👉🏼 genomebiology.biomedcentral.com/articles/10....

9 months ago 44 19 2 0

Formica gagates high-quality genome assembly was just cleared for uploading to ENA!

6 months ago 2 0 1 0

Deutsches Wort des Tages: Achterbahn

6 months ago 0 0 0 0

Later TODAY at 15:00 CEST! Efficient evidence-based genome annotation with EviAnn 🧬
👉 www.erga-biodiversity.eu/post/efficie... #genomeannotation #genomes #seminar #research #EviAnn @ebpgenome.bsky.social

6 months ago 10 4 0 0

Our paper Genomic diversity of the African malaria vector Anopheles funestus was published in Science today! It features inversions, selection in action, museum specimens and putative new ecotypes. doi.org/10.1126/scie...

7 months ago 63 33 3 3
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Buscan que el miércoles se trate un proyecto de ley que declara la emergencia del sistema científico Exige al Poder Ejecutivo que cumpla con la norma 27.614, aprobada en 2021 por amplísima mayoría, que garantiza el incremento progresivo de la inversión

En el orden del día, también figura la ley que declara el "estado de emergencia del sistema científico" 👇
www.eldestapeweb.com/sociedad/cie...

7 months ago 36 21 0 0
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Frontiers | The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of life The Earth BioGenome Project (EBP) aims to “sequence life for the future of life” by generating high-quality reference genome sequences for all recognized euk...

By the end of 2024, EBP-affiliated projects had publicly released 2'000 high-quality #genome assemblies 🧬, representing more than 500 eukaryotic families. www.frontiersin.org/journals/sci... #biodiversity #genomics

7 months ago 3 2 0 0
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I spy a Goshawk -if I’m not mistaken- (Accipiter gentilis) chillin’ in the Botanical, what a beauty. Genome nicely assembled & curated by the colleagues from @sangerinstitute.bsky.social
Handy data note here: wellcomeopenresearch.org/articles/7-1...

7 months ago 0 0 0 0

Preprint out for myloasm, our new nanopore / HiFi metagenome assembler!

Nanopore's getting accurate, but

1. Can this lead to better metagenome assemblies?
2. How, algorithmically, to leverage them?

with co-author Max Marin @mgmarin.bsky.social, supervised by Heng Li @lh3lh3.bsky.social

1 / N

7 months ago 114 80 5 5

Earth BioGenome Project Frontiers Online Forum Deep Dive on September 18, 2025 (07:00 PT | 16:00 CEST), where we will discuss the article and chart next steps for the field. 📌 Register here: events.frontiersin.org/earth-biogen...

7 months ago 8 5 0 0

Refining Feulgen: low-cost and accurate genome size measurements for everyone www.biorxiv.org/content/10.1101/2025.08....

7 months ago 3 2 0 0
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The European Reference Genome Atlas (ERGA) is a pan-European community initiative to coordinate the generation of reference genomes representing European eukaryotic biodiversity @ergabiodiv.bsky.social #eseb2025

8 months ago 22 14 1 1
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Come find us at the @ergabiodiv.bsky.social stand #eseb2025 exhibition hall

8 months ago 14 6 0 0
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GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction. #Genomics #Rust #GenomeAnnotation #GFF #GenomicFeatures @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...

8 months ago 26 11 0 0
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Deutsches Wort des Tages: Abstoßend

8 months ago 0 0 0 0
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Assessing the genetic diversity of the shamrock, Trifolium dubium, across Ireland - Biodiversity Genomics Europe Case study Assessing the genetic diversity of the shamrock, Trifolium dubium, across Ireland In 2023, a high-quality reference genome for Trifolium dubium, widely recognized as the shamrock, was gener...

New #BGE case study!

Researchers at UCD are using the #genome for Trifolium dubium to study its evolutionary history and beneficial traits,
which could enhance breeding programs for agriculturally important #clover species.

🔗: biodiversitygenomics.eu/2025/03/13/a...

ergabiodiv.bsky.social #DNA

1 year ago 5 4 0 0
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🧬 Explore the latest from Bioinformatics Advances: "Genome Evaluation Pipeline (GEP): A fully-automated quality control tool for parallel evaluation of genome assemblies" 

Full article available: https://doi.org/10.1093/bioadv/vbaf147 

Authors include: @diegomics.bsky.social, @cmazzoni.bsky.social

9 months ago 2 1 1 0
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📑Latest addition to the #openscience collection of the #European Reference #Genome Atlas (ERGA, @ergabiodiv.bsky.social) presents a the 1st #genome report for a sun spider (order Solifugae).

🔗 Find the report: doi.org/10.3897/arph...
🔍 Explore the collection to date: doi.org/10.3897/rio....

9 months ago 9 6 1 0

Schluss mit den Kürzungen! Hochschulen sind #unkürzbar!

9 months ago 0 0 0 0
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É sobre respeito e soberania.

9 months ago 3028 719 62 63
BUSCO - from QC to gene prediction and phylogenomics from QC to gene prediction and phylogenomics

BUSCO v6.0.0 has been released. busco.ezlab.org

9 months ago 32 11 0 0