Join us for the next CCP-volumeEM Show & Tell webinar: Jupyter Notebooks for Shareable Research Outputs with Dr Piper Fowler-Wright (Rosalind Franklin Institute).
🗓 Tuesday 21 April
🕧 12:30pm BST
💻 60-minute online talk
Find out more and register: www.ccp-volumeem.ac.uk/showandtell/...
Analyse public OME‑Zarr images using models from the BioImage Model Zoo! 🦒 Join us April 16 🕐️ 13:00–15:00 CEST — a perfect fit for Python 🐍 users ready for hands‑on work. @ai4life.bsky.social
#OMEZarr #AIinScience #ImageAnalysis #Workshop
forms.gle/5hQh1BoACPaF...
🚨🔬🚨🔬🚨
We are pleased to announce that registration for the 7th edition of the Crick BioImage Analysis Symposium #CBIAS 2026 is now open!
🕐November 23rd-24th, 2026📍The Francis Crick Institute, London. We look forward to seeing as many of you as possible there (or online 😀)
⏳️ Have you registered yet? #EuroBioImaging's Image Data Community Days event is happening next week. If you're curious about biological & preclinical #imagedata analysis, management, tools & more this event is for you.
Registration is FREE & open to all⤵️
www.eurobioimaging.eu/events/image...
Missed our latest CCP-volumeEM Show and Tell webinar? Dr Kimberly Meechan’s talk on Good practices for image analysis software is now available to watch on YouTube: www.youtube.com/watch?v=HHJJ...
A male researcher standing on stage in front of a large presentation screen with the text "ALL GOOD!??" showing
A male presenter on stage in front of a screen showing electron microscopy image data, with colourful overlays denoting a segmentation
Dominik Kutra from @ilastik-team.bsky.social presenting the latest updates to #ilastik for #BioImageAnalysis at the @zeiss-microscopy.bsky.social "From 3D Light to 3D Electron Microscopy“ symposium at @crick.ac.uk - very brave live demo with TB scale data!
@em-stp.bsky.social #VolumeEM
🔬 We highlight the #TechEM seminars in an interview with @drtranfield.bsky.social, @vibbioimagingcore.bsky.social, part of Flanders BioImaging Node, written by our Scientific Ambassador Muriel Mari. #ElectronMicroscopy
Check out this great initiative ⤵️
www.eurobioimaging.eu/news/techem-...
View of a laptop on a small table, with a plate of scones with jam and clotted cream and a cup of tea next to it
Enjoying @k-meech.bsky.social's #ShowAndTell talk in the @ccp-volumeem.bsky.social series while on holiday, with suitable holiday lunch 😄
The talk will be uploaded to the #CCPvolumeEM YouTube channel, link from the website: www.ccp-volumeem.ac.uk/showandtell
#BioImageAnalysis #CoSeC #VolumeEM
Did you know that if you are based in the UK, you can apply for funding to access #BioImageAnalysis services via the UK node of @eurobioimaging.bsky.social ?
Next application deadline is March 31st!
www.rms.org.uk/community/ne...
Are FMs actually FMing? ⛓️🔬
Thrilled to share that our paper on Foundational Models for mitochondria segmentation in EM is heading to the
@iclr-conf.bsky.social
2026 LMRL Workshop! 🚀
Check out the full work here:
📄 ArXiv: arxiv.org/abs/2602.08505
📄 OpenReview: openreview.net/forum?id=Bba...
Hello, world! We are starting a worker cooperative to build, maintain, teach, and support open source scientific imaging software.
image.coop/blog/posts/2...
View of the back of a laptop with a holographic sticker saying "CCP-volumeEM". In the background, out of focus, are a group of people sat at desks
Our first #CCPvolumeEM #hackathon is underway, with some amazing merch! We're looking at building community resources and knowledge for the use of #NGFF in #volumeEM #BioImageAnalysis
#OMEZarr #OMENGFF @cosec-ukri.bsky.social
Looking forward to learning more about this and how it can be used for #volumeEM at the #CCPvolumeEM #NGFF hackathon at @ebi.embl.org this week!
#BioImageAnalysis @cosec-ukri.bsky.social #OMEZarr
New Web Page - Volume EM Industrial Partners
www.volumeem.org/industrial-p...
We’re excited to introduce our newly curated Industrial Partners page, showcasing organizations recognized by the volumeEM Community as key contributors in the field.
📢 UK RESEARCHERS - Ever wished you could try a completely different imaging approach on your sample but lacked access to equipment or funds?
That's exactly what the Euro-BioImaging UK Node User Access Fund is for!
Applications are open year-round, with 3 deadlines/yr:
📅 31 Mar | 31 July | 30 Nov
Our first 'Show & Tell Series' webinar, presented last week, is now available on YouTube.
Watch here: www.youtube.com/watch?v=E-pi...
We hope it’s useful to the community - please share with anyone who may be interested #VolumeEM #Bioimaging
A comic from the XKCD webcomic showing the effects of CO2 emissions, with a temperature scale indicating the effect of temperature changing in 4.5 degree centigrade steps, from an ice age 20,000 years ago to possible future scenarios.
An important focus of @cosec-ukri.bsky.social activities like #CCPvolumeEM and other CCPs is the environmental impact of scientific computing.
@epcc.bsky.social have teaching materials at epcced.github.io/2026-02-26_G...
Comic image from xkcd.com/1379/
#GreenHPC #GreenComputing
Do you do image analysis?
Want to make it more robust and reproducible?
Have you heard of containers, but don't know why they’re useful, and how to use them?
@martinjones.bsky.social will explain all: crick.zoom.us/webinar/regi...
💖 We join #LoveDataWeek2026 by sharing the recordings from Image Data Community Days 2025! Follow the “Where’s the data?” theme with on-demand sessions on FAIR principles, analysis tools, AI & preclinical imaging.
🎬 Watch anytime here
youtube.com/playlist?lis...
❤️#LoveData26 Show your data some love! Register for 2026 Image Data Community Days for live talks, workshops and networking. All are welcome!
🗓️ Apr 13–17, online
Register 🔽
www.eurobioimaging.eu/events/image...
So excited for @ccp-volumeem.bsky.social OME-NGFF Hackathon 2026 at Hinxton!
🙌 The Image Data Community Days are back! Join us for 5 online days packed with lectures, hands-on workshops & networking sessions from 🗓️ April 13-17.
✅ Mark your calendars
✅ Fill in our “Collection of Interest” form
Learn more 🔽
www.eurobioimaging.eu/our-events/i...
👀Looking to connect with the CAKE community?👀
Jump into our Slack workspace and mailing list to exchange ideas and collaborate.
👉 www.cake.ac.uk/involved/
#KnowledgeExchange #DRI
Our Method of the Year 2025 is...drumroll please...EM-based connectomics!!
Our Editorial introduces our choice and highlights six Comments and other related content in this special issue. Please join us in celebrating EM-based connectomics! 🎉🧠🔬
www.nature.com/articles/s41...
Connectomics is Method of the Year 2025!!
@natmethods.nature.com
just released the news nature.com/articles/s41... In my perspective piece, I afford some predictions into the future and compare how we are doing vs. genomics www.nature.com/articles/s41...
Let's see how many computational volume EM talks we can get on the programme! Abstract submission deadline Friday March 6th 2026
#BioImageAnalysis #vem #volumeem
A flyer for the Bioimage Analysis Beginnings Bootcamp - blue and white with a picture of cells on the top. It says "Learn core bioimage analysis skills using open-source tools for light microscopy. Open to participants at all skill levels." It also says it will be held a the Broad Institute, 415 Main Street, Cambridge MA USA, on Monday to Friday January 12th-16, 2026, from 9-5pm. Registration is $750 academic, $1250 industry, and applications are open at broad.io/BAB3
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
Today I'm announcing a new digital textbook 📖🖥️, "An Introduction to OME-Zarr for Big Bioimaging Data".
ome-zarr-book.readthedocs.io
A day in the dark side, from light to electron microscopy image analysis!
We're attending today the @ccp-volumeem.bsky.social meeting, discussing approaches to build a collaborative computational community for volume electron microscopy
SynapseNet is a deep learning based software tool that automates the segmentation of vesicles, mitochondria, synaptic compartments, and the active zone. This is visualized in three panels. On the left, a section of an electron tomogram with a synaptic compartment densely filled with vesicles, which appear as round structures with dark boundary and light body in the image, is shwon. The top right panel shows the segmentation result of vesicles, visualized by masks with an individual color per vesicle and outlines for the segmented compartment (red) and active zone (blue). The bottom right panels shows a 3D rendering of the segmentation with vesicles shown as yellow spheres.
Are you studying synapses in electron microscopy? Tired of annotating vesicles? We have the tool for you! SynapseNet implements automatic segmentation and analysis of vesicles and other synaptic structures and has now been published:
www.molbiolcell.org/doi/full/10....