Kiln also has experimental OME-Zarr support. This is the Beechnut — a 3 GB micro-CT scan streamed directly from a public OME-Zarr store into the browser. No preprocessing, no conversion. github.com/MPanknin/kil...
#WebGPU #OMEZarr #VolumeRendering
Streaming OME-Zarr data directly into syGlass for #3DThursday🌍🔬
With #syGlass v2.6.0, datasets can stream from disk, S3, or HTTPS with no massive downloads required.
Huge thanks to the community building open imaging standards:
@openmicroscopy.org
#OMEZarr #Microscopy #OpenScience #Bioimaging
View of the back of a laptop with a holographic sticker saying "CCP-volumeEM". In the background, out of focus, are a group of people sat at desks
Our first #CCPvolumeEM #hackathon is underway, with some amazing merch! We're looking at building community resources and knowledge for the use of #NGFF in #volumeEM #BioImageAnalysis
#OMEZarr #OMENGFF @cosec-ukri.bsky.social
Looking forward to learning more about this and how it can be used for #volumeEM at the #CCPvolumeEM #NGFF hackathon at @ebi.embl.org this week!
#BioImageAnalysis @cosec-ukri.bsky.social #OMEZarr
syGlass v2.6.0 is out for #3DThursday! ❄️
🖥️ Sony Spatial Reality Display support
☁️ Direct OME-Zarr streaming from disk, S3, or HTTPS
🖌️ VR surface partition brush
⌨️ In-VR keyboard & numpad
🎮 Saved tool loadouts
www.syglass.io/blog/syglass...
#syGlass #Bioimaging #VR #3DData #OMEZarr #Sony
#NFDI #NFDI4BIOIMAGE #WinterDataWonders #OMEZarr
#MicroscopyData #FAIRdata #FAIRDigitalObjects
#ResearchDataManagement #OpenScience #BigData
Visual of segmented human induced pluripotent stem cells with the key workshop dates: Symposium on November 10-11, Hackathon on November 12-14th in Zurich Switzerland
We're happy to announce the 2025 International OME-NGFF workshop 🎉
📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025
📍 Location: Zurich, Switzerland
Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging #openscience #OMENGFF #OMEZarr
(1/x 🧵)
#ELMI2025 represents 25y of bringing the light microscopy community together!
Key themes: #metadata, #OMEZarr, data platforms, #FAIR RDM and core facility challenges.
Great to see #metadata spotlight!
Join us in Brisbane for the #foundingGIDE Community Event to continue the metadata discussion!
Junior Role – Web Developer / Prototyper
✨ Want to build tools that make scientific data pop in the browser?
We’re hiring a Web Developer / Scientific Prototyper to create interactive demos for #OMEZarr and bioimaging data.
Great team, real impact, all open source.
🔗 gerbi-gmb.de/resources/ca...
🚨 We’re hiring TWO new colleagues!
🧠 Structured Metadata Expert – Design data models, standards & annotations for #OMEZarr
🌐 Web Developer / Prototyper – Build interactive tools & demos for the community
Both fully remote. Both open science.
🔗 gerbi-gmb.de/resources/ca... #RSE #OpenScience
What did we learn at #EuroBioImaging Image Data Community Days? 🤓
➡️ Challenges w/big image data are being addressed through file formats like #OMEZarr
➡️ Workflow management systems help us w/FAIR image analysis
➡️ Multi-omics atlases powered by curated quality data allow integrated data querying
📍Imaging facilities play a key role in making image data #FAIRdata
📍Data support staff like #datastewards, RSEs, data curators are needed!
Join us tomorrow at the #EuroBioImaging Image Data Community Days for more #imagedata tools & management #NGFF #OMEZarr #ImagingCommunity
Bugra Özdemir from @eurobioimaging.bsky.social BioHub demonstrating how to work with #OMEZarr at the #TiM2025 Conference in Münsingen. We're having a great time at TiM and are thrilled to see the power of OME-Zarr in this hands-on workshop.
🚀 We're hiring! Join the German BioImaging Team as a Software Developer!
💻 Build scalable #bioimaging solutions
🌍 Collaborate globally
🎯 Contribute to open science through #OMEZarr @openmicroscopy.org
Remote, full-time. Apply by 31 Jan 2025: bit.ly/3Zrd4SR
Excited to be part of the #OME_NGFF_Hackathon 2024! Big thanks to @nfdi4bioimage.bsky.social, @joshmoore.bsky.social, @joelluethi.bsky.social, Christian Tischer, and the BioVisionCenter for hosting. Thrilled to see #OMEZarr pushing #FAIR bioimage #datamanagement forward!
Co-organized by @nfdi4bioimage.bsky.social through @joshmoore.bsky.social & Christian Tischer, we're happy to see the #OME_NGFF_Hackathon 2024 in full swing! Exciting work bringing forward #OMEZarr for #FAIR bioimage data management. Shout out to the host BioVisionCenter!
@gerbi.bsky.social #NFDI
Hackathon group picture in the lecture room
Hackathon group picture in the restaurant (where not everyone fit on the picture unfortunately)
Josh Moore giving a talk at the hackathon
Matt McCormick asking a question
This week, we're hosting the #OME_NGFF_Hackathon 2024 at the BioVisionCenter at the University of Zurich. We're bringing together 40 motivated researchers and specialist for #OMEZarr workflows, #OMEZarr Python tools & #OMEZarr Java tools. (1/3)
