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Posts by Vanderschuren Lab

"Postdoc position in genomics and transcriptomicsto investigate biological nitrification inhibitionin wild speciesforagroecology applications at University of Liege, Liege, Belgium"

Read more here: arabidopsis.org/news/jobs/view

#PlantSciJobs

5 months ago 1 1 0 0
Genomic advanced tools are now available to take full advantage of our gene mining platform using the world banana collection we are hosting in Leuven in close collaboration with The Alliance/Bioversity. https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.70044

Genomic advanced tools are now available to take full advantage of our gene mining platform using the world banana collection we are hosting in Leuven in close collaboration with The Alliance/Bioversity. https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.70044

Our paper is now published in the latest @newphyt.bsky.social issue. Genomic advanced tools available for our gene mining platform using the world banana collection @bioversityciat.bsky.social
nph.onlinelibrary.wiley.com/doi/full/10....

@kuleuvenplantinst.bsky.social @fwovlaanderen.bsky.social

9 months ago 8 2 0 0
Dynamics and distribution of eccDNA in Arabidopsis. Left: Schematic representation of eccDNA amplification and sequencing via CIDER-Seq pipeline. Top right: EccDNA size distribution in Arabidopsis Col-0 leaf tissues (n = 4,158). The x-axis shows eccDNA size in kb and the y-axis shows the percentage of eccDNAs belonging to each window. Middle right: Size ranges of eccDNAs with marked median and quantiles (n = 4,190). Bottom right: Percentages of eccDNA reads mapping to TAIR CDS, TE, or intergenic databases (values represent the average of three replicates).

Dynamics and distribution of eccDNA in Arabidopsis. Left: Schematic representation of eccDNA amplification and sequencing via CIDER-Seq pipeline. Top right: EccDNA size distribution in Arabidopsis Col-0 leaf tissues (n = 4,158). The x-axis shows eccDNA size in kb and the y-axis shows the percentage of eccDNAs belonging to each window. Middle right: Size ranges of eccDNAs with marked median and quantiles (n = 4,190). Bottom right: Percentages of eccDNA reads mapping to TAIR CDS, TE, or intergenic databases (values represent the average of three replicates).

Previous studies of extrachromosomal circular DNA #eccDNA in #plants are based on short-read seq. @vanderschuren-lab.bsky.social uses long-read seq to obtain a map of full-length eccDNAs from #Arabidopsis, identifying their genomic origins & epigenetic regulation @plosbiology.org 🧪 plos.io/44Mq3RI

9 months ago 16 6 0 0

Our team is recruiting a PhD student to implement advanced agroecological approaches in close collaboration with @bioversityciat.bsky.social Join an international research team and contribute to innovative strategies in tropical agrosystems. Please Repost.
www.kuleuven.be/personeel/jo...

9 months ago 1 1 0 0
A BAC-guided haplotype assembly pipeline increases the resolution of the virus resistance locus CMD2 in cassava

We just released in #GenomeBiology an important collective work. Improved assembly and annotation of a virus resistance locus in #cassava. @universitedeliege.bsky.social @kuleuvenplantinst.bsky.social @kuleuvenuniversity.bsky.social @inrae-cnrgv.bsky.social @yvdp.bsky.social
rdcu.be/et1TZ

9 months ago 3 2 0 0