cool tuning of protein language models to individual families with ProteinTTT #Alphafoldology
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Hashtag
#AlphaFoldology
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Alphafold is great, but newer #Alphafoldology tools such as RFdiffusion, Boltz-2, Chai, or BindCraft would be even nicer…
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I have received my Professorship in Biomolecular Chemistry and Structural Biology today from the hands of our President Petr Pavel
On personal #Alphafoldology notice - I’ve got my Professorship in Biomolecular Chemistry and Structural Biology today.
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Binding affinities with #Alphafoldology using Boltz-2
ligands and ensembles included
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GOLD-plated #Alphafoldology?
not so quickly…
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Scoring #Alphafoldology with AF3score
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Nice short primer to basic #Alphafoldology tools
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Largest #Alphafoldology study so far…
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KULL #Alphafoldology to generate conformations to see side-chain dynamics with #AF2
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Massive #Alphafoldology with MassiveFold
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weekend #Alphafoldology ;)
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ESMfold is well usable LLM for protein structure prediction - it is way quicker than AlphaFold and it has reasonable quality
#Alphafoldology
esmatlas.com
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AF2 and AF3 limitations
Alphafold 3 gets better model when given more structural context
When to use AF2 and when to use AF3?
and finishing a lecture by comparing Alphafold2 and Alphafold 3 #Alphafoldology
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oligomeric #Alphafoldology preprint
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nice #Alphafoldology update of domains additions to AlphafoldDB
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Predictomes #Alphafoldology curated binary complexes using SPOC classifier
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ROCKET #Alphafoldology fitting to lowres CryoEM to get conformation along the way
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#Alphafoldology story about Demon-duck of doom :)
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Important #AlphaFoldology thread about scoring intramolecular complexes in #AF2 and #AF3
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#Alphafoldology comparison for protein-ligand interactions
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#AlphaFoldology use of AF2bind to predict small molecule binding sites for human proteome
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#AlphaFoldology - AF3 got better...
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Protenix now have bioRxiv #Alphafoldology
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#alphafoldology in Pymol
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Nobel #Alphafoldology - lectures from David Baker, Demis Hassabis and John Jumper were quite enlightening.
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#Alphafoldology of good peptide structure prediction with #AF2 of over 500 peptides test set
www.biorxiv.org/content/10.1...
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#Alphafoldology make moves - MD-like generative AI moves to generate conformations with diffusion and evoformer. Cool stuff
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Crosslinking to improve AF3 models.
#AlphaFoldology
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#CASP ligand #Alphafoldology - #AF3 wins over all other methods in baseline ligand prediction…
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Nice quick #Alphafoldology review of #AF3 clones.
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