GREmLN: A Cellular Regulatory Network-Aware Transcriptomics Foundation Model https://www.biorxiv.org/content/10.1101/2025.07.03.663009v1?rss=1 Comments * really brilliant work: LLM + neural transformer architecture * a molecular biologist, I long-thought (no time to learn / program) flux-based analysis / ODE models * this type of modeling is foundational to in silico modeling * huge proponent of graphs - add LLM, attention heads - brilliant! 😀 👍️ kudos #BiologicalModeling #FoundationModels #LLM #attention #GraphTheory #bioinformatics

GREmLN: Cellular Regulatory Network-Aware Transcriptomics Foundation Model
www.biorxiv.org/content/10.1...

* brilliant work: LLM + neural transformer architecture
* huge proponent of graphs - add LLM, attention heads
#BiologicalModeling #FoundationModels #LLM #attention #GraphTheory #bioinformatics

A simple new alternative to the linear-quadratic model (and where the LQ model comes from) I present a new dose-survival equation for fitting clonogenic assay data collected for cancer cells exposed to radiation. It is a single-target model. The short form of the equation, applicable to nor...

My Friend Lydia just pre-published her paper.

www.biorxiv.org/content/10.1...

#RadiationBiology
#ClonogenicAssays
#CancerResearch
#LinearQuadraticModel
#DoseResponse
#CellSurvival
#Oncology
#Radiotherapy
#BiologicalModeling
#radiationoncology #linearquadraticmodel #fractionation