TransformerST
#SpatialTranscriptomics

Image-gene co-representation:
Gene expression+Spatial coordinates+Histologic images

w/o scRNAseq reference

Note for Lung Microvascular researchers with #VISIUM
✅stLearn SpaGCN TransformerST

#BriefingBioinfo 2024
academic.oup.com/bib/article/...

stAA
#SpatialClustering method
#SpatialTranscriptomics Python
github.com/CSUBioGroup/...

Variational graph autoencoder & Wasserstein generative adversarial network->
latent embedding
+transcript-based classifier->
⏫Spatial domain detection

#BriefingBioinfo 2024
academic.oup.com/bib/article/...

THItoGene

From H&E to #SpatialTranscriptomics

#DeepLearning
#CapsuleNeuralNetwork
Efficient-CapsNet for spatially-aware multi-level pathology image features

vs #Hist2ST #HisToGene on #Visium tumor/brain datasets

#BriefingBioinfo 2023
academic.oup.com/bib/article/...