Webinar at EMBL-EBI: "Spatial transcriptomics in action: a case study from human reproductive development". 8 April 2026, 14.30-15.30 BST. Speaker (with headshot): Valentina Lorenzi, Wellcome Sanger Institute"

Join us next week for the last #webinar in our
#SpatialTranscriptomics series: Valentina Lorenzi will deliver the talk “Spatial transcriptomics in action: a case study from human reproductive development”.

Registration is free but essential: www.ebi.ac.uk/training/eve...

Map gene expression in situ with Novogene Spatial Transcriptomics. 10x Genomics' Visium HD tech preserve tissue architecture and uncover spatial patterns of regulation, cell interactions & microenvironments. #SpatialTranscriptomics #SpatialOmics https://tinyurl.com/mpdppu3j

Single-cell and #SpatialTranscriptomics of primary testicular #DLBCL reveal an exhausted CD8⁺ T cell–dominated microenvironment and spatial immune architecture, with E2F and CREB inhibition suppressing #lymphoma proliferation and #tumor growth.

#OpenAccess: doi.org/10.1016/j.ge...

Single cell sequencing. #NGS-based #spatialtranscriptomics. High-plex in situ.

These technologies were once impossible. Then they were improbable. Now they’re indispensable. So what will be next on that list?

See what’s next: https://bit.ly/4awhVJg

Graphics image about a webinar on managing spatial data, which will run on first April 2026 at 14:30 UK time. Image credit: Karen Arnott, EMBL-EBI

Join us next week for the sixth #webinar in our
#SpatialTranscriptomics series: Thomas C Smits and Morgan L. Turner will present the talk about managing spatial data.

Registration is free but essential: www.ebi.ac.uk/training/eve...

#SpatialTranscriptomics #CellSegmentation

FastReseg
github.com/Nanostring-B...

Using transcript scoring +"spatial doublet" test to rectify segmentation errors🥸

vs transcript-dominant approaches: Baysor Proseg

#SciReports 2025
www.nature.com/articles/s41...

Exciting new study from #EricAndWendySchmidtCenter fellow Josephine Yates, et al.,
introducing SpatialFusion: a lightweight #multimodal #FoundationModel combining #histopathology and #SpatialTranscriptomics for pathway-informed spatial #niche mapping.
👉 httpis://doi.org/10.64898/2026.03.16.712056

#SingleCell #SpatialTranscriptomics #Alzheimers #AD

Today, the #DukeMGC is celebrating our 500th @10xgenomics.bsky.social #Xenium sample! From our first run in March of 2023 to now, we've learned a lot and generated data for many publications 🧬

For more info on our #SpatialOmics services, see dmpi.duke.edu/cores/molecu...

#SpatialTranscriptomics

Whole-embryo spatial transcriptomics at subcellular resolution from gastrulation to organogenesis Gene expression patterns underlie development, but their systematic detection in whole embryos has remained elusive. We introduce a whole-embryo imaging platform using multiplexed error-robust fluores...

Whole-embryo #spatialtranscriptomics at subcellular resolution from #gastrulation to #organogenesis | Science www.science.org/doi/10.1126/...

🧬 Win £2,000 for your sequencing project!

The Novogene UK & Ireland Sequencing Project Award 2026 supports researchers using single-cell RNA-seq, spatial transcriptomics, or multi-omics.

📅 Deadline: 4 May 2026

Apply now: tinyurl.com/4vv2wjre

#SingleCell #SpatialTranscriptomics #Genomics

We’ve had an amazing week learning about #SpatialTranscriptomics with Tancredi Pentimalli and this fantastic group of participants!

It was a very dynamic & interactive learning environment, & we hope everyone is leaving the course with plenty of new knowledge & ideas to apply in their research. 🚀📊

Dr. Sanja Vickovic in front of imaging technology.

Envision the future of #SpatialTranscriptomics and #DigitalPathology tools in a new article spotlighting IICD Core Member Sanja Vicković and her lab> bit.ly/40o5jOA #CancerResearch #BiomedicalEngineering #Multiomics #ColorectalCancer

SpatioTemporal Omics eneRgIES

STORIES
Learning Waddington differentiation potential (FGW loss) from #SpatialTranscriptomics (across time points) using Optimal Transport

Tunable weights of spatial information

Compute both pseudotime & velocity

#NatMethods 2025
www.nature.com/articles/s41...

We’ve kicked off our 5-day journey on #SpatialTranscriptomics with Tancredi Pentimalli and an amazing international group of attendees!

Excited for an inspiring week of learning and hands-on sessions ahead!

@bioconductor.bsky.social
#SingleCell #Genomics #Bioinformatics #RStats #SpatialOmics

Webinar at EMBL-EBI: Integrating single-cell and spatial transcriptomics to map the rules of neurological conditions. 18 March 2026. 14:30-15:30 GMT. Speaker (with headshot): Koen Rademaker, Wellcome Sanger Institute

Join us next week for the fifth #webinar in our
#SpatialTranscriptomics series: Koen Rademaker will present the talk "Integrating single-cell and spatial transcriptomics to map the rules of neurological conditions".

Registration is free but essential: www.ebi.ac.uk/training/eve...

🖥️🧬

The framework reveals hidden tissue heterogeneity and is a powerful approach to high-resolution analysis in tumor and brain research.

#PKUResearch #PekingUniversity #AcademicSky #SpatialTranscriptomics #Genomics #Bioinformatics #ComputationalBiology @natcellbio.nature.com

#SpatialTranscriptomics

Optimizing Xenium In Situ data utility by quality assessment & best-practice analysis workflows

Must-read for Xenium user🔥

👉Segmentation
👉Spatially variable feature selection
👉Imputation
👉Spatial domain identification

#NatMethods 2025
www.nature.com/articles/s41...

Spatial transcriptomics is transforming tissue biology 🔬

Free webinar: 📅 March 31, 2026 | 10:00 AM BST

Learn fundamentals of 10x Genomics Visium HD, applications, sample prep best practices & data analysis.

Register here: tinyurl.com/zu8n4zr3

#SpatialTranscriptomics #Genomics #NGS #10xGenomics

Does your study require #spatialtranscriptomics?
We have a sample report available demonstrating how #bioinformatics can help!
Request the report today at:
www.fiosgenomics.com/spatial-transcriptomic-a...

Webinar at EMBL-EBI. Interactive visualisation of spatial transcriptomic data. 11 March 2026, 14:30-15:30 GMT. Speaker (with headshot): Michele Bortolomeazzi, DKFZ

Join us next week for the fourth #webinar in our
#SpatialTranscriptomics series, where we will talk about how to visualise spatial transcriptomics data using napari and Vitessce.

Registration is free but essential: www.ebi.ac.uk/training/eve...

🖥️🧬

🚨3-year Postdoc Position @halloulab.bsky.social (Kennedy Institute, Oxford) - on Spatial Biology & Bioinformatics of Fibrosis🚨

An exciting project combining #SpatialTranscriptomics & #Mechanobiology👇:

shorturl.at/LLS5r

Deadline: 16 March - Please RT 📢!

@kiroxford.bsky.social @ox.ac.uk

Postdoc researcher Sonia Fonseca in the single-cell labs at EI demonstrating our Vizgen MERSCOPE spatial platform

#Spatialtranscriptomics is a powerful tool to analyse gene expression at a cellular level, with increasing studies in multiple systems.

But traditional histology techniques can focus on the morphology of a sample, often without consideration of maintaining high-quality RNA for secondary analysis.

Innovations in spatial imaging could unlock higher wheat yields Scientists at the Earlham Institute and the John Innes Centre are pioneering powerful single-cell visualisation techniques that could unlock higher yields of global wheat.

And earlier this year, scientists from Earlham Institute and @johninnescentre.bsky.social published a study using #spatialtranscriptomics to map the expression of 200 genes across four stages of wheat development, revealing new insights as to how the wheat spike forms.

#spatial #genomics

Spatiotemporal analysis of human intestinal development at single-cell resolution Development of the human intestine is not well understood. Here, we link single-cell RNA sequencing and spatial transcriptomics to characterize intest…

📄 Key paper on single cell RNA sequencing and spatial transcriptomics in fetal intestine:
www.sciencedirect.com/science/arti...

#WIMMSpotlight #WIMMCommunity #PaediatricResearch #IntestinalImmunology #SpatialTranscriptomics #SingleCellGenomics #RareDiseaseResearch #MRCWIMM

Earlier this month at CSI Science Exchange, we welcomed Dr. Norbert Tay for a research sharing session titled “Understanding Merkel Cell Carcinoma with Spatial Transcriptomics.” He is a Postdoctoral Fellow at @uofmichigan.bsky.social.

#cancerresearch #spatialtranscriptomics #merkelcellcarcinoma

Next #DukeSCIRIP seminar is March 4th 12-1pm online or in MSRBIII!

Join us for talks on ongoing research in #SpatialTranscriptomics and #SingleCell at Duke, this month from the Ji lab and #DukeMGC🧬

For more info or to join virtually, please visit dmpi.duke.edu/duke-single-...

This study maps spatio-temporal gene interactions during #amyloidβ accumulation using #SpatialTranscriptomics, uncovering ligand–receptor dynamics and transcriptional networks of #AlzheimersDisease etiology. @tulanemedicine.bsky.social

#OpenAccess: doi.org/10.1016/j.ge...

Work from the #DukeMGC will be on display at #AGBT2026:

Tuesday 1:30-3:30, poster #401

Wednesday 4:45-6:15, poster #472

Come find us to chat about our data! 🧬

#AGBT #SpatialTranscriptomics #SingleCell #Benchmarking #LongReadSequencing

New research from Jim Whelan's lab and @lewseylab.bsky.social uses @10xgenomics.bsky.social single-cell and Xenium spatial transcriptomics to crack open mitochondrial stress signaling in plants.

#Xenium #10xGenomics #SpatialTranscriptomics #PlantScience