QHap: GPU-Accelerated Quantum-Inspired Haplotype Phasing via Max-Cut Optimization

QHap reformulates haplotype phasing as a Max-Cut problem solved via GPU-accelerated ballistic simulated bifurcation, achieving 4–20× speedup over HapCUT2/WhatsHap with zero switch error on MHC region across CycloneSEQ, HiFi, and ONT platforms.

#QuantumInspired #HaplotypePhasing #Bioinformatics

Multi-platform framework for mapping somatic retrotransposition in human tissues. #SomaticRetrotransposons #MobileElementInsertions #MEIs #HaplotypePhasing #Genomics #Bioinformatics @biorxiv-genomic.bsky.social
www.biorxiv.org/content/10.1...

ChromPhaser: A HiFi Read Phasing Framework Integrating SNPmers and Hi-C Data Assembling complex heterozygous genomes is hindered by highly similar allelic sequences and interchromosomal repeats, such as segmental duplications and rDNA arrays. Partitioning long HiFi reads by…

ChromPhaser: A HiFi Read Phasing Framework Integrating SNPmers and Hi-C Data. #HaplotypePhasing #HiFi #LongRead #Sequencing #HiC #Bioinformatics #Genomics @biorxiv-genomic.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...

Advances in haplotype phasing and genotype imputation. #HaplotypePhasing #GenomeImputation @natrevgenet.nature.com
www.nature.com/articles/s41...