UCSC Xena's teal blue and pink logo with a speech bubble that reads 'See you at #AACR26'. Generated using Gemini.

Excited to be going to #AACR26! We have a poster on Tuesday, April 21st, 2pm - 5pm, Section 4 Board 29. Drop on by! www.abstractsonline.com/pp8/#!/21436... #nciitcr

Finally, this work provides inspiration and use cases for our machine learning tools in @galaxyproject.bsky.social
, which is part of #NCIITCR These tools simplify machine learning and promote best practices when using machine learning for cancer and other biomedical research. 8/ End 🧵

Screenshot of the TCGA Breast Cancer (BRCA) on UCSC Xena with a dropdown menu open for the phenotype variable 'PAM50Call_RNAseq', highlighting the newly added GSEA (Gene Set Enrichment Analysis) option using a yellow box and arrow.

🚨 Cally Lin developed our well-loved #GSEA analysis on Xena, using tools from Avi Ma'ayan's lab! #nciitcr @theaacr.bsky.social
📍 Catch her poster at #AACR25
🗓️ Tues, April 29, 2–5 PM
📌 Section 46, Board 7
www.abstractsonline.com/pp8/#!/20273...
👤 Connect with Cally: www.linkedin.com/in/callylin

UCSC Xena poster up at AACR 2025 which highlights our single cell views

First day at #AACR25! Our poster is now up at Section 46 Board 17. Drop on by! www.abstractsonline.com/pp8/#!/20273... #nciitcr @theaccr

AACR 2025 logo

Excited to be at #AACR25! We have a poster on Sunday, April 27th 2pm - 5pm, Section 46 Board 17. Drop on by! www.abstractsonline.com/pp8/#!/20273... #nciitcr @theaacr.bsky.social

Genomics to Notebook (g2nb): extending the computational notebook An environment that integrates Jupyter with Galaxy, allowing tools to be added as notebook cells, and providing access to thousands of bioinformatics tools from within a notebook interface.

The Genomics to Notebook (g2nb) environment is featured on the @galaxyproject.bsky.social blog. Read about how to use Galaxy, IGV, and other bioinformatics tools from within a @jupyter.org notebook interface!

galaxyproject.org/news/2025-04...

#nciitcr #bioinformatics

Thank you @jgoecks.bsky.social & @moffittnews.bsky.social for your collaboration to make Cancer Informatics Tools more accessible to researchers in your region. Check out what we covered here (www.itcrtraining.org/resources/blog) and stay tuned for more workshop opportunities coming soon! #NCIITCR

#NCIITCR tools used at the workshop include
@galaxyproject.bsky.social, @bioconductor.bsky.social, spatialGE, and spatialTIME Thank you
@itcrtraining.bsky.social

ITN - Blog What's ITN up to?

Great blog post describing the recent @itcrtraining.bsky.social cancer informatics workshop held at @moffittnews.bsky.social
This was a fantastic event with great attendance from the next generation of cancer data scientists! #NCIITCR

www.itcrtraining.org/resources/blog

GitHub - broadinstitute/Tangram: Spatial alignment of single cell transcriptomic data. Spatial alignment of single cell transcriptomic data. - GitHub - broadinstitute/Tangram: Spatial alignment of single cell transcriptomic data.

Tangram is now available on GenePattern! 🎉 Map sc-RNA-seq data onto spatial gene expression data. GPU & CPU compatible for flexible workflows.
📷 GitHub: t.ly/07w-M
👉 CPU: t.ly/9G2lJ
👉GPU: t.ly/XO8qA
#nciitcr
@broadinstitute.org

Team Science! - Cracking the Cancer Code In this episode we discuss how modern cancer research increasingly requires collaboration between traditional lab scientists and computational experts from the earliest stages of study design. The epi...

Excited to talk for #NCIITCR about the role of team science in cancer research crackingthecancercode.buzzsprout.com/2219246/epis... @cansavvy.bsky.social

Xena logo plus a talk bubble saying 'See you at #AACR24'

Last day at #AACR24! Drop by our poster at Section 35 Board 1. www.abstractsonline.com/pp8/#!/20272... #nciitcr

Logo for Sidra Medicine

Dr. Bhat looked at the prognostic significance and immune infiltration patterns related to Claudin heterogeneity in pancreatic ductal adenocarcinoma patients www.abstractsonline.com/pp8/#!/20272... Find them tomorrow morning, April 10, Section 46 poster 4. @SidraMedicine #NCIITCR #AACR23

Aaron Shaykevich in front of his poster at AACR 2024 'Carbamazepine mediated SMARCA4 inhibition as a therapeutic target for KRAS-mutated CRC'

Check it out! Shaykevich, Dr. Maitra, et al explored carbamazepine-mediated SMARCA4 inhibition as a therapeutic target for #ColorectalCancer. Poster is this afternoon Section 27 Poster 18. www.abstractsonline.com/pp8/#!/20272...  #AACR24 @YUNews #NCIITCR

Logo for AACR Annual Meeting 2024 in San Diego

Check out research Xena enabled at #AACR24! Chayil Lattimore explored genomic differences in Black patients treated with chemoradiation for #HNSCC. Her poster is today 1:30-5:00p, Section 32 Poster 4. www.abstractsonline.com/pp8/#!/20272...  #NCIITCR @CaretiaJay19 @UFHealthCenter @CaRE2HEC @UFCTSI

Shaykevich (right) and Silverman (left) standing in front of their poster at AACR

Shaykevich, Dr. Maitra, et al researched intermediates of PRMT5/BRG1 as a combination therapy for #ColorectalCancer. Check it out this morning, April 8, at poster Section 13, Board 21. www.abstractsonline.com/pp8/#!/20272... #AACR23 @YUNews #NCIITCR

AACR 2024 poster on Telomere-related genes associated with clinical-pathological in pancreatic ductal adenocarcinoma

Check out @Erika__Curiel 's research at #AACR24 to identify a telomere-related gene signature for #PDAC. Find her this morning, April 9, Section 13 Poster 15. Xena helped enable this analysis! www.abstractsonline.com/pp8/#!/20272... #NCIITCR @Melendez_Zajgla @AACR @PCBIOLOGICAS @inmegen

Logo for AACR Annual Meeting 2024 in San Diego

Excited to be at #AACR24! We have a poster on Wednesday, April 10th 9am - 12pm, Section 35 Board 1. Drop on by! www.abstractsonline.com/pp8/#!/20272... #nciitcr