NEUBIAS Pasteur course on Bioimage Analysis - 2025 - Research Topics The exact schedule is still being finalized. Here is a description of the course content. Both tracks of the course have a specific focus on hands-on and interactive tutorials. They are meant t...

Do you want to learn #BioimageAnalysis? Do you want to strengthen your skills?

We're thrilled to announce the #NEUBIAS Pasteur Course on Bioimage Analysis - May 2025! in @pasteur.fr Paris!

research.pasteur.fr/en/course/ne...

Details are on the page linked here, some info below 👇

Do you have any ressources to teach spatial analysis, eCDF, Ripley function, clustering algorithms Tsne, UMAP, etc
And what did you use QuPath, CytoMAP, Python, R ? #BiaTools #Globias #spatial #clustering #Neubias

Annual Workshop Gothenburg 2024 GloBIAS Bioimage Analysts Workshop Nov 5, 2024 - Nov 8, 2024 | Gothenburg, Sweden Bioimage analysts' workshop: start building the GloBIAS scientific society Contents: Building the GloBIAS societ...

Register for the first in-person workshop of the Global BioImage Analysts' Society

Gothenburg, 5-8 Nov 2024

www.globias.org/activities/a...

We are offering 10 travel grants to help the global #bioimageanalysis community join us in Sweden.

#GloBIAS
#NEUBIAS
#CCI_GU_SE

The new Global Bioimage Analysts' Society (GloBIAS) initiative announces the first in-person workshop to be held in Gothenburg, Sweden, 4-8 November 2024.

More info on our new website: globias.org

@globias.bsky.social #NEUBIAS #bioimageanalysis

Thibault Dhellemmes, @remi_kinet @fab_cordelieres & Prof. Marc Landry from @Neuro_Bordeaux contributed a new 3D colocalization ImageJ plugin (still semi-private, needs permission to access till published) to the #NEUBIAS @zenodo. Merci! https://zenodo.org/record/8087693

Porto, Portugal 2023

IN-PERSON #NEUBIAS training school and symposium! Deadline for the Training school on Wednesday... sorry for this busy announcement.
https://bit.ly/NEUBIAS2023-Porto https://x.com/NEUBIAS_/status/1632735255005110275

We can now go further! #NEUBIAS #BioimageAnalysis https://x.com/CiminiLab/status/1617939409470656512

Bioimage Data Analysis Workflows ‒ Advanced Components and Methods

#NEUBIAS textbook 2022 is now (finally...) online!

link.springer.com/book/10.1007/978-3-030-7...
#BioimageAnalysis
enjoy....

Not only about CellProfiler but also about the cluster usage and R scripts - a full workflow. Thanks to Hanneke! #NEUBIAS #BioimageAnalysis https://x.com/HanOkken/status/1524693226103398400

A new submission to the @zenodo NEUBIAS community, with liver metastasis data but data is not yet there. Let's wait till they become uploaded... Thanks to @Trono_Lab @ChiguireKun @romainGuiet et al!
#NEUBIAS #BioimageAnalysis

A new addition to the NEUBIAS @zenodo community: IJ macro code for COVID-19 lung damage quantification. paper: https://f1000research.com/articles/11-326/v1
datasets: https://zenodo.org/record/5805939 #NEUBIAS #BiomageAnalysis

Happy to see "taggathon" cited. #NEUBIAS #BioimageAnalysis

Bioimage Analyst Position (Research Assistant), Parkville, Victoria, Australia

#BioImageAnalysis #NEUBIAS https://x.com/DrLachie/status/1471703999678062594

... so a bioimage analyst should compare all these, characterize differences, maybe also a benchmark, and write a paper! #NEUBIAS #BioimageAnalysis

A new "My favorite tools by #NEUBIAS members" article is now online.

Title: Cellpose: deep learning-based, generic cell segmentation
https://t.co/Wat7xfzSk0

Thanks to Bram van den Broek (Netherlands Cancer Institute, Amsterdam) for his great contribution!

Just got a report: 85k downloads "Bioimage Data Analysis Workflows"! Thanks to all the contributors, @NEUBIAS_COST and @COSTprogramme #BioimageAnalysis #NEUBIAS

Bioimage Analysis Component Lecture
#NEUBIAS https://x.com/dwaithe/status/1397299669974323204

The book cover of the NEUBIAS textbook 2021 is now ready. #BioimageAnalysis #NEUBIAS

Addition of three image data to the NEUBIAS community @ ZENODO. Thanks to the contributors! @_pm_lab
@FritzPreusser
@preibischs
@haesleinhuepf #BioimageAnalysis #NEUBIAS
https://zenodo.org/communities/neubias/?page=1&size=20

This is a community effort! We need your help in adding new tools, curation and the website development and maintenances for the continuation!!’ #bioimageanalysis #neubias https://x.com/focalplane_jcs/status/1361656117881958400

Simon (@SimonFlyvbjerg ) and I wrote a commentary concerning how to avoid mishandling and misconducts in image handling and analysis:

https://t.co/3jdvthJXLm

For any questions and suggestions, please use the forum thread:

https://t.co/rUv9lV6hID
#BioImageAnalysis #NEUBIAS

Two new datasets added to the #NEUBIAS community @ Zenodo. Mitochondria and Neurons
https://zenodo.org/communities/neubias/

someone try this and comment on it? It looks better than MultiStackReg

#BioimageAnalysis
#NEUBIAS https://x.com/CedricMoisy/status/1347075496849387520

Bioimage Analysis Survey 2020 Dear colleagues, Please spread the text below to your colleagues in your institute, not only to imaging people but especially towards departments and groups of researchers undertaking life science research: can be a mailing list, forums, or your contacts. Thanks a lot! Sincerely, Kota, on behalf of Clara, Julia & Julien (WG7, NEUBIAS) Dear Colleague Researchers, Please take your 60 seconds to answer the 9 questions in the survey "Assessment of Image Analysis Needs in Life Science”, linke...

Please Spread!

Bioimage Analysis Survey 2020:

forum.image.sc/t/bioimage-analysis-surv...

Direct link to the questionnaire:

https://bit.ly/ImageAnalysisNeeds2020

Deadline: Dec. 24, 2020.
#bioimageanalysis
#neubias

#NEUBIAS guys on stage, JACOP & SR-Tesseler in action @fab_cordelieres @f_levet x.com/FrontCellDevBio/status/1...

NEUBIAS@ZENODO new data upload #BioimageAnalysis #NEUBIAS

Emb3_2x2_Mosaic_2CAMs_12GB Mouse embryo head, 3D cropped out volume from the complete scan, 2 columns x 2 rows mosaic, two camera views, dividing nuclei in PH3-A488 fluorescence channel. The 3D tiles are stored as series of 2D TIFF files. The original dataset is 866 GB in size and includes 2 fluorescence channels.

A new data set of mouse embryo head published, #Neubias community @ zenodo

https://zenodo.org/record/4106878

maybe someone from #NEUBIAS people willing to challenge this? not #Bioimage analysis but Geoimage analysis https://x.com/Cat_Crotty/status/1316027517002633217

A new article of the series "My favorite tools by #NEUBIAS members" written by @ahklemm , in "Imaging & Microscopy", is now online. It's about TrackMate of @jytinevez #BiomageAnalysis
analyticalscience.wiley.com/do/10.1002/was.00070020/...

guys, here is the major upgrade of http://biii.eu

https://biii.eu/
#neubias
thanks to @perrinepgil and @_chong_zhang for leading this progress.