How does PAML read a rooted tree? IQ-Tree is the software i use most often to build phylogenetic trees. Sometimes I also need to deal with the output of PAML. However, PAML-MCMCtree could read rooted tree in a different order from …

How does PAML read a rooted tree? sishuowang2022.wordpress.com/2025/04/25/h... #phylo #PAML #iqtree