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7Song, one of our country's foremost master herbalists, has released his online herbal database - and it's FREE! (Please consider donating if you use it, or just to support him. Link is in part two of this thread.)
@7song.bsky.social #herbalism #plantmedicine #plantdatabase #herbdatabase
Schematic diagram explaining the RNAseq analysis pipeline used to build MtExpress. First box: raw data & metadata from public databases (e.g. NCBI). Second box: Expression measure (STAR/Salmon) using the nf-core/rnaseq pipeline. Third box: data normalized with the TMM method from EdgeR package. Fourth box: Normalized values, gene annotations and dataset metadata are consolidated into a database made of parquet files accessible through an API to feed the web interface. Taken from figure 1 of Carrere et al. https://doi.org/10.1093/pcp/pcab110
#JSPP 2025 Awards
📢 PCP top cited research paper award goes to:
@sebcarrere.bsky.social, Jerome Verdier & Pascal Gamas for their #PlantDatabase, MtExpress - a RNAseq-based gene expression atlas for the model #Legume #Medicago truncatula 🌱🧬
🎉Félicitations! 👏
doi.org/10.1093/pcp/...
#PlantScience
📜 RLKdb: A comprehensive curated receptor-like kinase family database
🧑🔬 Zhiyuan Yin, Jinding Liu, Daolong Dou
📔 @biorxiv-plants.bsky.social
🔗 www.biorxiv.org/content/10.1...
#️⃣ (Feeds) #PlantScience #PlantDatabase #CellSignalling #PlantSignalling
📜 PEO: Plant Expression Omnibus – a comparative transcriptomic database for 103 Archaeplastida
🧑🔬 Eugene Koh, Marek Mutwil, et al.
📔 The Plant Journal
🔗 onlinelibrary.wiley.com/doi/10.1111/...
#️⃣ (Feeds) #PlantScience #CoExpression #PlantTranscriptomics #PlantDatabase #PlantGenomics
