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Posts by Miha Kosmac

Examples Home Articles Examples Manual News Playground

The examples are just ridic.

pkg.yihui.org/gglite/examp...

Hardest going soft launch ever.

1 week ago 15 2 1 0

#virology #science #vaccines #HepB

1 week ago 0 0 0 0
Spotify – Web Player

New virology pod from the brilliant Florian Krammer.

This week's episode of viroLOGICAL is about hepatitis B (and D) virus.

➡️ Spotify:
open.spotify.com/show/2LxUpjumK…

➡️ Apple Podcasts:
podcasts.apple.com/at/podcast/vir���

➡️ Podigee: https://virological.podigee.io/

1 week ago 1 0 0 1
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The Flanders super group is warming up and it has a new band member 🎸🥁🎹🎤🚴‍♂️ #RVV26

2 weeks ago 56 6 2 1
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On the balance of knowledge Nature Reviews Immunology - Ruslan Medzhitov shares his thoughts on the balance between generating data and developing theories in immunology, with a focus on exploring the rules that govern...

Free to access link: rdcu.be/e2DCZ

2 months ago 1 0 0 0

"You can count the feathers of every starling in a flock if you have the right technology but this will give you no insight into their murmurations. "

2 months ago 1 2 1 0
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Britain must not squander its brilliance in biotech - United Kingdom News Beep Biotechnology is one of the most revolutionary, yet underappreciated, technologies of our time. This year alone, it promises personalised cancer vaccines,

Britain must not squander its brilliance in biotech

https://www.newsbeep.com/uk/413224/

Biotechnology is one of the most revolutionary, yet underappreciated, technologies of our time. This year alone, it promises…

2 months ago 2 1 0 1
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dplyr 1.2.0 release notes: replace_values() , recode_values() , replace_when() , filter_out() cran.r-project.org/web/packages... #Rstats

2 months ago 13 9 0 0
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The Carney doctrine Open comment thread on the PM's Davos speech

Carney's speech is brilliant. Here is a transcript. I suspect we will be feeling some serious pain in Canada shortly from the reaction
open.substack.com/pub/paulwell...

3 months ago 305 117 31 29
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A Clinical Trial Nightmare

Prepare for the most groan-inducing CRO drug trial situation you’ve come across in a loooooong time:

3 months ago 40 5 4 2
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Petition to rename the Midlands ‘The Neitherlands’

3 months ago 50 2 7 0
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After you help your boss convert a doc to PDF

5 months ago 11480 1405 130 60
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What Rosalind Franklin truly contributed to the discovery of DNA’s structure Franklin was no victim in how the DNA double helix was solved. An overlooked letter and an unpublished news article, both written in 1953, reveal that she was an equal player.

On the event of James Watson's death, I highly recommend this 2023 commentary from @matthewcobb.bsky.social and Nathaniel Comfort with crucial new insights into the discovery of the double helix. (And also check out Cobb's brand new biography of Francis Crick) www.nature.com/articles/d41...

5 months ago 266 122 7 7
The Empire State Building flanked by two buildings, under a broken cloudy sky.

The Empire State Building flanked by two buildings, under a broken cloudy sky.

Sometimes you just gotta look up and marvel about the things that human beings have built together.

5 months ago 3953 305 167 21
The driver "managed to contact the control
centre at Network Rail and get the train
diverted onto the slow line", Calder says.


"That was absolutely crucial because this
train was scheduled to be travelling through
Huntingdon station on the tracks with no
platform at 125mph."


"It didn't stop in the middle of nowhere,
which would have been very difficult."


Calder thinks this was handled in the "safest
possible way" thanks to the "incredible
professionalism from the driver and the
police". Train drivers are trained on how to
take appropriate action, he adds,

The driver "managed to contact the control centre at Network Rail and get the train diverted onto the slow line", Calder says. "That was absolutely crucial because this train was scheduled to be travelling through Huntingdon station on the tracks with no platform at 125mph." "It didn't stop in the middle of nowhere, which would have been very difficult." Calder thinks this was handled in the "safest possible way" thanks to the "incredible professionalism from the driver and the police". Train drivers are trained on how to take appropriate action, he adds,

Next time someone tells you that train drivers "just push buttons" show them this from the BBC

5 months ago 3639 1038 72 36
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Tchéky Karyo, star of Nikita and The Missing, dies at 72 The French actor was known for supporting roles in films that spanned nearly 40 years.

Oh non !
www.bbc.co.uk/news/article...

5 months ago 5 1 0 0
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Pre-print alert! And this one really is a must read for anyone that does spectral #flowcytometry. It is a complete, fully-automated spectral unmixing pipeline that reduces error up to 9000-fold.

Want to get a tough sample, like lung, looking like this? Read more!

www.biorxiv.org/content/10.1...

5 months ago 93 42 3 4

I am genuinely impressed by large language models - they can absorb disparate components of text into some consolidated view, they can produce extremely good language and - with the right model - translate pretty well between languages and they are an excellent text based UI for humans to use. But..

5 months ago 73 22 2 9
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Nobel Prize in Physiology or Medicine 2025 The 2025 Nobel Prize in Physiology or Medicine has been awarded jointly to Mary E. Brunkow, Fred Ramsdell and Shimon Sakaguchi “for their discoveries ...

Happy #treg day everyone - congratulations to Mary Brunkow, Fred Ramsdell, Shimon Sakaguchi and to all the immunologists who have contributed to this incredible field. See our collection: www.nature.com/collections/...

6 months ago 36 13 0 0
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For our #flowcytometry peeps, would you like to have a single fix/perm protocol that is optimised for everything? One that preserves fluorophores while allowing simultaneous TF and cytokine staining? How about 100-fold cheaper?

You got it:
currentprotocols.onlinelibrary.wiley.com/doi/10.1002/...

7 months ago 160 70 10 11
Video

Let's be honest: this is so much better (and more memorable) than the real one could ever have been.

One for the ages.

#LaVuelta25

7 months ago 50 12 3 1

Each other's? Do tell more...

7 months ago 1 0 1 0
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Hypercapitalist hellhole or city of dreams? Behind the cliches, let me show you the real Dubai | Momtaza Mehri Everyone’s got an opinion about the city. But few in the west know the multicultural, unusual Dubai that I’ve seen up close, says poet Momtaza Mehri

Hypercapitalist hellhole or city of dreams? Behind the cliches, let me show you the real Dubai | Momtaza Mehri

7 months ago 32 4 9 4

Monoclonal antibodies were invented at the institution I did my PhD - MRC Laboratory of Molecular Biology in Cambridge.

A funny backstory to this is that Milstein tried to patent the finding, however, the MRC concluded that they were unable to "identify any immediate applications"..

Oopsie 🤦‍♂️

8 months ago 27 7 4 0

Wait, is that Bashar al-Assad???

8 months ago 11 3 3 1

Someone asked if I had plans for the fall.

It took me a moment to realize they meant "autumn," not the collapse of civilization.

8 months ago 110 12 2 0
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Fifty years of monoclonals: the past, present and future of antibody therapeutics - Nature Reviews Immunology Fifty years ago, Köhler and Milstein introduced the world to hybridoma technology for the generation of monoclonal antibodies. Scientists have subsequently built upon this seminal discovery to develop...

Review @natrevimmunol.nature.com
Fifty years of monoclonals: the past, present and future of antibody therapeutics
www.nature.com/articles/s41...

8 months ago 6 2 1 0
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A C. elegans model for a human disease

8 months ago 57 9 1 2
This is figure 2 showing how SNAP-tag engineering is aiming for faster and brighter fluorescence labeling

This is figure 2 showing how SNAP-tag engineering is aiming for faster and brighter fluorescence labeling

SNAP-tag is a widespread tool for labelling protein for bioimaging. An article published in Nature Chemical Biology presents SNAP-tag2 with increased labelling kinetics and brightness, which translates into a better performance in live-cell super-resolution imaging. go.nature.com/46fMIZd 🧪

9 months ago 50 12 0 0
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Probabilistic migration events drive transient tissue residency of lymphocytes during homeostasis Tissue-resident lymphocytes form a phenotypically and functionally distinct analog to the corresponding circulatory lymphocyte populations. Residential CD8 T cells, in particular, are identified as having prolonged residence in the tissues and key functions in recall responses at tissue-environmental interfaces, although the dwell time in individual tissues has yet to be resolved. Residential CD4 T cells, regulatory T cells, B cells, and NK cells have been demonstrated to share phenotypic properties with residential CD8 T cells, but the migratory kinetics are even more poorly defined. Here we used probabilistic modelling on a large parabiosis dataset, covering multiple time-points and tissues, to calculate migration kinetics and dwell times of multiple lymphocyte subsets across a diverse set of tissues. Markov chain modelling identified distinct cell type-specific and tissue-specific residency patterns. The liver and gut were prone to prolonged residency compared to other tissue types, and a hierarchy of residency was observed with CD8 T cells and NK cells demonstrating longer residency than CD4 conventional T cells and regulatory T cells, which in turn resided in tissues longer than B cells. With few exceptions, however, average residency was at least an order of magnitude shorter than the life-span of the mouse, indicating a more dynamic form of steady-state tissue residency than usually assumed. Together these data provide a comprehensive model of a pan-tissue shared program in lymphocyte tissue residence, as well as identifying cell type- and organ-specific modification of the migratory kinetics. ### Competing Interest Statement The authors have declared no competing interest. Wellcome Trust, https://ror.org/029chgv08, 222442/Z/21/Z European Research Council, TissueTreg

I'm excited about a new @biorxivpreprint.bsky.social story that just went live! This one takes a #computational #immunology approach to understanding #tissueresident lymphocytes. The story highlights the extra value mathematical modelling can bring to biology. 🧵1/10

www.biorxiv.org/content/10.1...

9 months ago 66 22 1 3