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Posts by Adam Ameur

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Anthropic secretly installs spyware when you install Claude Desktop — That Privacy Guy! Anthropic's Claude Desktop silently installs a Native Messaging bridge into seven Chromium browsers, including browsers Anthropic's own documentation says it does not support, and browsers the user ha...

#oopsie
Anthropic secretly installs spyware when you install Claude Desktop
www.thatprivacyguy.com/blog/anthrop...

3 days ago 1659 862 73 94
The AI Rewrite Dilemma

Blog post on "The AI Rewrite Dilemma": lh3.github.io/2026/04/17/t...

5 days ago 54 29 3 4
Screenshot of Science commentary articleL Scientists stunned by ‘fundamentally new way’ life produces DNA.
Newly discovered bacterial defense system challenges genetic code’s central dogma. Image: In a newly discovered bacterial defense system, paired strands of DNA (orange and cyan) are synthesized by two enzymes: One (yellow) uses an RNA template (beige) to guide the assembly of the nucleotide bases that make up DNA, while a second, highly unusual enzyme (light blue) uses its own amino acids as a template."

Screenshot of Science commentary articleL Scientists stunned by ‘fundamentally new way’ life produces DNA. Newly discovered bacterial defense system challenges genetic code’s central dogma. Image: In a newly discovered bacterial defense system, paired strands of DNA (orange and cyan) are synthesized by two enzymes: One (yellow) uses an RNA template (beige) to guide the assembly of the nucleotide bases that make up DNA, while a second, highly unusual enzyme (light blue) uses its own amino acids as a template."

As a scientist, I am here to report that this headline is indeed accurate as I am in fact STUNNED!!

Wow. This is incredible. 🧪

"Newly discovered bacterial defense system challenges genetic code’s central dogma.":
www.science.org/content/arti...

5 days ago 65 33 4 2
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Given a discussion on another thread, thought it might be useful to start a separate thread on how users are achieving higher ONT yields—extraction kits, size selection, sample type, basic stats, etc.

Anyone welcome to chime in.

@acritschristoph.bsky.social
@kirk3gaard.bsky.social

1 week ago 15 3 3 0
Long-Read Sequencing Uppsala, November 2–4, 2026 #LRUA26: Empower your research with long-read sequencing technologies and connect with experts, peers, and industry leaders in Uppsala this November.

📣Registration and abstract submission now open for the Long‑Read Sequencing Uppsala 2026 meeting, taking place November 2–4!

For abstract submission, registration, and the preliminary program, please visit the conference website:

👉 lrua.se

1 week ago 5 6 0 0
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Hello from Gothenburg! 🇸🇪
The ESHG team is at the last Site visit in Gothenburg to go through all the details for the conference #eshg2026. Looking forward to seeing you there!

Register and join us on-site in June: 2026.eshg.org/registration/

3 weeks ago 10 2 0 0

That's a great point. I think the RNA quality is pretty good in this case, but I'm not sure to what extent this could be a problem

3 weeks ago 1 0 0 0

Thanks. Yes I think you're right.. It would be nice though if it was possible to get really long direct RNA reads

4 weeks ago 1 1 0 0

Thanks, will take a look

4 weeks ago 0 0 0 0
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What's the current best strategy to sequence complete transcripts in the ~20kb range? Should we attempt generating full length cDNA, or go for direct RNA on ONT? I suppose it will be a challenge in any case..

4 weeks ago 1 1 3 0
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Single-molecule peptide sequencing through reverse translation of peptides into DNA - Nature Biotechnology Peptides are sequenced by converting each amino acid into amplifiable DNA barcodes.

Would I have called it reverse translation? No. Do I think it is? Also no. Is it cool? Heck yes.

www.nature.com/articles/s41...

1 month ago 41 14 2 0

In collab w @hdashnow.bsky.social, we have a new preprint out on tandem repeat (TR) mutagenesis! Using HiFi sequencing, we profiled nearly 8 million TR loci across four generations of a large CEPH/Utah family and identified 1,270 de novo expansions and contractions.
www.biorxiv.org/content/10.6...

1 month ago 14 7 1 0
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Roche Axelios1 Run Pricing: Not A Knockout - Yet? By far the most awaited news at AGBT was Roche's reveal of the pricing scheme for Axelios 1 consumables: what would be the structure and how...

Roche Axelios1 Run Pricing: Not A Knockout - Yet?

#AGBTGM26

🧬💻

omicsomics.blogspot.com/2026/03/roch...

1 month ago 5 1 0 0
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Illumina Constellation Becomes TruPath Genome Illumina is rebranding their Constellation mapped read technology to TruPath Genome and launching it into the marketplace. Priced at $395 pe...

Ooof - I was sloppy on the Illumina TruPath Genome piece - easy to blame AGBT fatigue but that's a lazy excuse. The following errors have been corrected

omicsomics.blogspot.com/2026/02/illu...

1. TruPath doesn't have an "e" in it. About 14 mistakes = including the title!

1 month ago 6 1 1 0
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Illumina launches TruPath Genome, setting a new standard in genomic insight

Illumina officially launches TruPath, their pseudo-long read sequencing kit (formerly called Constellation), at #AGBT #AGBT25

www.illumina.com/company/news...

1 month ago 8 1 0 0
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Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis academic.oup.com/bioinformati... 🧬💻🧪 github.com/genomic-medi...

2 months ago 8 5 0 0

This looks really interesting

2 months ago 1 1 0 0
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Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis AbstractMotivation. Long-read sequencing (LRS) is increasingly used for human medical research and clinical diagnostics, due to its capacity to generate co

Say hello to Nallo - our Nextflow pipeline for long-read WGS analysis!👋 It handles both ONT and PacBio data and we’re using this for rare disease and population projects in Sweden. A big team effort by Felix Lenner, Anders Jemt et al.🧬💻 academic.oup.com/bioinformati...

2 months ago 11 4 0 0
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Element Joins the High-Throughput Market with the VITARI Platform Back at JPM Element teased that they would be coming out with the VITARI, a benchtop sequencer capable of generating whole genomes for $100. This would best Illumina’s list price of $200 with the N…

Element reveals more information about their VITARI platform, a foray into the high-throughput sequencing market. sandiegomics.com/element-join...

2 months ago 3 2 0 0
AGBT 2026 Preview AGBT starts on Monday at the Signia by Hilton Bonnet Creek in Orlando on Monday, but the pre-conference flurry of announcements is already r...

AGBT 2026 Preview

#AGBT26 #AGBT2026 #AGBTGM26

🧬🖥️

omicsomics.blogspot.com/2026/02/agbt...

2 months ago 5 1 0 0
Portrait of Tove Fall, SciLifeLab Group Leader and Uppsala University Professor, with greenery all around.

Portrait of Tove Fall, SciLifeLab Group Leader and Uppsala University Professor, with greenery all around.

🧪 In two new studies on 28,000 individuals, researchers are able to show how 11 genetic variants affect gut microbiome.

@tovefall.bsky.social (SciLifeLab/@uu.se) led one of the studies.

Learn more in the Uppsala University press release here:
www.mynewsdesk.com/uu/pressrele...

2 months ago 9 4 0 0
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Long-Read Sequencing Uppsala, November 2–4, 2026 #LRUA26: Empower your research with long-read sequencing technologies and connect with experts, peers, and industry leaders in Uppsala this November.

Save the date! The Long‑Read Sequencing Uppsala Meeting (#LRUA26) is happening Nov 2–4, with a great lineup of invited and selected speakers

Stay tuned — registration and abstract submission will open soon🧬🖥️

lrua.se

2 months ago 8 4 0 0
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Live-cell single-molecule dynamics of eukaryotic RNA polymerase machineries Eukaryotic gene expression is orchestrated by RNA polymerases (RNAPI, II, and III) and associated factors, yet their real-time dynamics remain obscure. Using single-molecule tracking in living yeast, ...

🧬🔬🎥 @science.org Live-cell single-molecule dynamics of eukaryotic RNA polymerase machineries | Science www.science.org/doi/10.1126/...

2 months ago 49 17 0 0
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New tool from @alexsweeten.bsky.social to find and classify all your satellites: "AniAnn's: alignment-free annotation of tandem repeat arrays using fast average nucleotide identity estimates"
📄 www.biorxiv.org/content/10.6...
📦 github.com/marbl/anianns

2 months ago 44 19 4 1
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Hello #FOG2026! We love hearing how #HiFiSequencing supports key moments in your work—from breakthroughs to impact.

Let’s partner to support your research—stop by today. #TheresHiFiForThat

@sptlabtech.bsky.social @adameur.bsky.social

2 months ago 6 2 0 0
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ONT Axes P2 Solo, Roiling Community Oxford Nanopore has a serious case of user community unrest, triggered by the announcement that the P2 Solo (aka P2s) will be phased out sta...

ONT Axes P2 Solo, Roiling Community
🧬🖥️

omicsomics.blogspot.com/2026/01/ont-...

2 months ago 11 8 1 0
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🚀 Registration is now OPEN! longtrec.eu/VALT/
Join us in Valencia, Spain for the first symposium dedicated to #LongReadsTranscriptomics 🧬, with a dream set of keynote speakers.
@pacbio.bsky.social @nanoporetech.com @elixir-europe.org @iscb.bsky.social @hitseq.bsky.social @i2sysbio.es

3 months ago 12 7 0 1
JP Morgan 2026 Roundup The J.P. Morgan conference last week was mostly small tidbits of info on the sequencing front, with Element delivering the one big teaser an...

JP Morgan 2026 Roundup

🧬🖥️

omicsomics.blogspot.com/2026/01/jp-m...

3 months ago 6 1 0 0
Asking google who is more suave, Ian Dunt or Dorian Lynskey, with -noai in the search term, returns no hits

Asking google who is more suave, Ian Dunt or Dorian Lynskey, with -noai in the search term, returns no hits

Asking google who is more suave, Ian Dunt or Dorian Lynskey, returns some AI blather

Asking google who is more suave, Ian Dunt or Dorian Lynskey, returns some AI blather

In case useful @iandunt.bsky.social , @soniaz.bsky.social has just shown me how to turn off the AI summary in google search! Just add -noai. Just did a simple test comparing you and @dorianlynskey.bsky.social

3 months ago 10 8 1 1
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Catch 4 presentations featuring HiFi data at #FOG2026 on Jan 28 with Anna Lindstrand, @robpitceathly.bsky.social, @whaerty.bsky.social, and @adameur.bsky.social. Learn how #LongReadSequencing is enabling diagnostics and uncovering new therapeutic opportunities.

Full details here: bit.ly/3MAm7y1

3 months ago 4 2 0 0