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Posts by Matyas Bubna-Litic

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3 weeks ago 0 0 0 0

Brainstorming 😉

1 month ago 2 1 0 0

Please share to promote an early-career researcher organised free conference for dev bio!
@socdevbio.bsky.social @isdb.bsky.social @cellsdev.bsky.social @devbiol.bsky.social

1 month ago 0 0 0 0

The time to sign up is now!

1 month ago 0 1 0 0
Video

JCS snapshot - Tracking coordinated cellular dynamics in time-lapse microscopy with ARCOS.px

@macdobry.bsky.social presents the key findings from their recent JCS paper with @bgraedel.bsky.social and colleagues @olivierpertz.bsky.social.

journals.biologists.com/jcs/article/...

2 months ago 24 10 0 1

Great visual guide for how to make interpretable plots in R.

1 month ago 4 1 0 0
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Tissue phase transitions in development: more than just mechanics Summary: Tissue material phase transitions are classically thought to regulate tissue deformability. This Review emphasises their unexpected roles in directly influencing growth and patterning signall...

Excited to share our new review in @dev-journal.bsky.social on tissue phase transitions during development!

@karengrace12.bsky.social @nicolettapetridou.bsky.social

🔗 doi.org/10.1242/dev....

2 months ago 72 26 2 2
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Job alert! 📣 I’m looking for a research assistant to join my new team @idrm.ox.ac.uk

Were using #zebrafish to understand gene-environment interactions that shape the heart 🫀generate natural diversity 🐸🐭 and contribute to congenital defects ❤️‍🩹

Full info below, and please share! 🫶🏻

bit.ly/467TO0M

2 months ago 34 22 0 1
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Video

Excited to share Alison's @alisonkickuth.bsky.social paper from the lab out in @nature.com this week! We uncovered how a mechanical ratchet mechanism drives cytokinesis in early #zebrafish embryos. Read more in this thread 🧵 and at www.nature.com/articles/s41... 🤩
@poldresden.bsky.social @mpi-cbg.de

3 months ago 150 60 8 5

My group will investigate the stochastic morphodynamics of living systems at the interface of biophysical modelling and computational biology.

I will announce positions for PhD students and postdocs in the coming months! Feel free to DM me if you are interested!

3 months ago 9 2 1 0
Many small photos taken from the symposium organised to reveal Spemann and Mangold in the background.

Many small photos taken from the symposium organised to reveal Spemann and Mangold in the background.

We're in love with this cover image! 🧡
Part II of our Special Collection celebrating the Centennial of the Discovery of The Organiser is here. This issue focuses on the work presented at the Centennial Symposium at the University of Freiburg in September 2024:
www.sciencedirect.com/journal/cell...

4 months ago 30 11 1 1
Video

#Mastodon, the Command Center for Large-Scale Lineage-Tracing Microscopy Datasets, is finally heading for publication (well, let's see). To #cite or not to cite shall no longer be the question 🙃, because the #preprint. Software is available in every #Fiji near you.

www.biorxiv.org/content/10.6...

4 months ago 112 48 1 1
Video

Pleased to say that Jonas Hartmann (bs-less) and I have finally released DySTrack (“diss track”) - Dynamic Sample Tracking.

It’s a Python-based, modular tool that brings smart microscopy to everyday imaging on commercial systems.

Preprint: www.biorxiv.org/content/10.6...

[1/6]

4 months ago 68 26 4 5
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🌈 Rainbow neurons on the move!🧠
MultiColor FlpOut of L3 optic lobe neurons projecting into the medulla neuropil. 📸 Image by Isabel Holguera.
#FluorescenceFriday #DevBio

5 months ago 71 15 1 1

Thanks! 🦓🐟 are great for that

5 months ago 1 0 0 0
A figure illustrating examples of physics-inspired theory in developmental biology. Please read the linked article for more information.

A figure illustrating examples of physics-inspired theory in developmental biology. Please read the linked article for more information.

Searching for physical principles of morphogenesis

In this #OpenAccess Spotlight, Nikolas Claussen, Fridtjof Brauns and @streichan.bsky.social highlight the ‘physics of development’, focusing on the interplay between quantitative experiments and mathematical theory

doi.org/10.1242/dev....

5 months ago 31 11 1 0
Fluorescent microscopy image of a  28 hours post fertilization zebrafish labelled with DAPI and phalloidin

Fluorescent microscopy image of a 28 hours post fertilization zebrafish labelled with DAPI and phalloidin

Happy (and spooky) #FluorescenceFriday

Switching from frogs (which are underrated btw) to zebrafish has really made me appreciate transparent tissues! 🐟

28 hpf, ⚪ nuclei, 🔴 F-actin

5 months ago 30 5 1 0

📣Our project, “Mechanometabolic Control of Vertebrate Limb Elongation,” has been funded by Wellcome!
Over the next 8 years, we’ll collaborate with @manningresearch.bsky.social and Nathalie Agar’s group to understand the mechanics of ECM-rich mesenchymal tissues! Funded positions available!🎉

7 months ago 22 8 7 0
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That's such a great book cover

6 months ago 3 0 0 0
Cartoon of a speculative heterogenous cell population performing mesenchymal collective cell migration.

Cartoon of a speculative heterogenous cell population performing mesenchymal collective cell migration.

1/12 A very special moment for me! 🎉

My first paper as corresponding author—a @jcb.org Perspective on how contact-based decision-making in collective cell migration can itself encode blueprints for complex patterns and shapes.

rupress.org/jcb/article/...

#cellbio #devbio #science

🧵for details

6 months ago 116 34 5 2

Animal caps are back in fashion!

6 months ago 0 0 1 0

Pretty cool

6 months ago 5 0 1 0
Schematic overview of our project. Dissection of Xenopus neural crest following morpholino knockdown of miRNA, then extraction of RNA for RNA-seq

Schematic overview of our project. Dissection of Xenopus neural crest following morpholino knockdown of miRNA, then extraction of RNA for RNA-seq

Our new paper is out in Dev Biol! 🎉 🐸🧬
We show #miR-196a directs #neural crest fate in #Xenopus by repressing immature neural #ectoderm — evidence #miRNAs can potentially drive, not just fine-tune, early patterning
👉 Read more here: doi.org/10.1016/j.yd...
@devbiol.bsky.social @biouea.bsky.social

7 months ago 52 13 0 0
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Mouse (Mus musculus) 🐭 is the powerhouse of mammalian genetics, essential for studying embryogenesis, organ development and gene function using transgenic technologies. 📸 Image by Zhong Hua also featured on the cover of Developmental Biology textbook (11th edition) #ModelMonday

7 months ago 50 8 0 1

Thank you for sharing! I'd like to highlight the concept of embryonic 'actuation' where a mechanical state change is caused by cells acting on each other through mechanics and/or biochemical signals but importantly not mediated by fate transitions.

7 months ago 6 0 0 0

Got stunning fluorescence microscopy images? 🌈🔬 SDB wants to feature YOUR work for #FluorescenceFriday! We highlight images from SDB members with a short description and the image creators 📸. Fill out the form to be featured: docs.google.com/forms/d/e/1F...

7 months ago 10 4 0 0
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I'm going to be advertising for a few positions in my group in the next couple of months for a big project on synthetic microbial communities.

I would love to hear from you if you are interested and I'd also appreciate if everyone could share this far and wide!

8 months ago 24 13 2 3
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✨Not a rainbow trout… a rainbow zebrafish 🌈 🐟
The expression of 10 different genes simultaneously including Hox genes along the body axis, somites, brain regions, skeletal muscle, and heart 🔬Image by Alice Sherrard, Gabby Jerz & Nipam Patel 🧪 #FluorescenceFriday

8 months ago 40 11 0 1
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🚨Only 4 days to apply!!!🚨Join the SDB SciComm Internship! Gain hands-on experience writing stories on the latest developmental biology discoveries🔬Connect with top mentors & earn $500 to attend the SDB Annual Meeting 🎉! 👉 www.sdbonline.org/science_comm... #SciComm #DevBio

8 months ago 13 11 0 3
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Postdoctoral Research Associate: Modelling Neural Crest Anomalies (mouse/human) - the Node The Liu lab is looking for a postdoc with a love of embryos and developmental biology! This post is part of an MRC-funded collaboration between Karen Liu’s lab at King’s College London and Marco Trizz...

Dev biologists! 3-yr postdoc position at King's, collaboration with Trizzino lab @marcotrizzino.bsky.social modelling CHD3 neural crest. We are looking for postdocs with mad embryology skills @the-node.bsky.social #developmental @ccrb27.bsky.social

thenode.biologists.com/jobs/postdoc...

8 months ago 39 43 0 2