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Posts by Ebrahim Lab

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Deep Learning for Microscopy Image Analysis Topics The following will be covered extensively during lectures, exercises, and project work: Image denoising and restoration (fully supervised and self-supervised) Image translation (e.g.,

🚨 Alarm!!! 🚨
AI/ML course for microscopy image analysis!!! 🧐
In 2026 at Janelia (@hhmijanelia.bsky.social), no tuition, housing and meals provided! Isn’t that borderline unbelievable?!?

20 students, ~14 TAs and lecturers
🗓️ June 4-18 2026

✍️ Jan 15 2026 ✍️

🔁 pls!!

www.janelia.org/you-janelia/...

3 months ago 78 62 0 3
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From earlier this week: This issue’s Cover: @ebrahim-lab.bsky.social @dominikrobak.bsky.social & team report on the septin cytoskeleton at apical junctions of intestinal epithelial cells, whereby it maintains barrier integrity & protects from inflammation: insight.jci.org/articles/vie...

4 months ago 5 2 0 0

Thanks, Helge!!

4 months ago 1 0 0 0

Very excited to share the latest work from our lab in @insight.jci.org, highlighting a role for the #septin #cytoskeleton in protecting against "leaky gut", by recruiting non-muscle myosin II and stabilizing the tight junction.

Credit to @dominikrobak.bsky.social for the stunning cover image!

4 months ago 17 8 1 2
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Check out our new preprint on the discovery of a molecular switch in NAC that mediates nascent chain sorting on the ribosome and prevents mitochondrial protein mistargeting by SRP. A great collaboration with the Shan Lab @Caltech and the Qi Lab @UVA: www.biorxiv.org/content/10.1...

8 months ago 83 28 4 3

Having seen your bingo card, we had to make it happen 😉!

Thank you for highlighting our work @hankgreen.bsky.social ! 🙏🏽

8 months ago 2 0 0 0

Thank you, Ilya! :)

11 months ago 1 0 0 0
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Proposed mechanism of MVB formation

11 months ago 1 0 0 0
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Early for #MicroscopyMonday: #Hemifusomes- Newly discovered ESCRT-independent intermediates of intraluminal vesicle and multivesicular body formation! In collaboration with the Kachar Lab at the NIH and out today in @natcomms.nature.com : rdcu.be/emtQu

#cryoET #trafficking #organelle #hemifusion

11 months ago 36 9 3 2
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11 months ago 0 0 0 0
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"Stereocilia"- actin-based skyscrapers that adorn sensory cells of our inner ear and covert vibrations into electrical signals—the first step in hearing and balance. #FluorescenceFriday

11 months ago 20 4 0 0
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🎉🎉We’re on the cover of Nature Physics! @natphys.nature.com

Here is the original paper www.nature.com/articles/s41...

11 months ago 48 8 1 0
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From stem cell to structure-
This human colonoid shows the self-organization of intestinal epithelial cells in 3D—nuclei in magenta, actin in green. A living miniature gut for your #FluorescenceFriday.

11 months ago 18 1 0 0
Expansion microscopy micrograph of the choanoflagellate Choanoeca flexa, vaguely evocative of a cactus. Red = tubulin, green = actin, blue = DNA

Expansion microscopy micrograph of the choanoflagellate Choanoeca flexa, vaguely evocative of a cactus. Red = tubulin, green = actin, blue = DNA

Same with yellow = lipids (BODIPY)

Same with yellow = lipids (BODIPY)

A dream come true: the first expansion microscopy images of C. flexa 🤩 Generated by Mylan & Uzuki who learned from the best (@hiralshah.bsky.social @gautamdey.bsky.social @dudinlab.bsky.social). We will learn so much from these!

11 months ago 294 58 20 9

Only 29 slots left out of 200--register now!

1 year ago 8 7 0 0
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🧫 A gentle reminder that your gut is an actual work of art.
#FluorescenceFriday #BeneathTheScope

1 year ago 36 7 0 0
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Two months left for FASEB Conference - Septins: Spatial regulators of cell biology
Register now:
events.faseb.org/event/septin...
Come find out what these filaments do at the interface of the actin and microtubule cytoskeletons and cell membranes. You'll be hooked for life.

1 year ago 11 5 0 1

Is liver zonation conserved from mice to humans? And how does fibrosis affect zonation in patients? Now, these questions are answered using scDVP. Some collaborations are meant to be! @carolineweiss.bsky.social@frosenberger.bsky.social @mannlab.bsky.social@mlsb-borgwardt.bsky.social

1 year ago 8 6 0 0
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#MicroscopyMonday | Colon-scoping turned coral reef

Was imaging the colon when I accidentally stumbled into this glowing patch of vascularized white adipose tissue.

🔵 mT/mG mouse (mT-only) → red membranes shown in cyan

Accidental imaging hits different.

#IntravitalImaging #LiveImaging

1 year ago 2 1 1 0
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Excited to share our preprint on the molecular architecture of heterochromatin in human cells 🧬🔬w/ @jpkreysing.bsky.social, @johannesbetz.bsky.social,
@marinalusic.bsky.social, Turoňová lab, @hummerlab.bsky.social @becklab.bsky.social @mpibp.bsky.social

🔗 Preprint here tinyurl.com/3a74uanv

1 year ago 360 141 12 20
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#3DThursday | Intestinal villi in all their folded glory

These self-renewing, nutrient-absorbing structures are beautiful and functional.

🔴 Phalloidin
🔵 DAPI
🟢 Clvd cas-3 (extrusion in action!)

Fixed tissue 3D imaging = big insight, tiny resolution.
#Microscopy #3DImaging #biophysics #intestine

1 year ago 2 1 0 0
Molecular Biology of the Cell (MBoC)

Have cutting-edge cell biology research to share? Submit to Molecular Biology of the Cell (MBoC)- dedicated to advancing discovery and fostering collaboration.

Proud to be part of the editorial team supporting groundbreaking science. molbiolcell.org

#CellBiology #MBoC #Research

1 year ago 2 0 0 0