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Posts by James Orr

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PLEASE SHARE. PhD Opportunity with me, Ben Raymond and Jan Engelstaedter and Andrew Letten at University of Queensland.

Experimentally testing mechanisms of how temperature may change selection and spread of AMR in E. coli. Coupled with some advanced modelling and sequencing.

🧪🦠 #microsky

3 weeks ago 18 28 1 1
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The first Eco-Onco Exchange seminar has been postponed by one week, to Apr 22nd! Register here: forms.gle/B77tZmyzCzmp...

1 month ago 6 5 0 0

great summary of our newest paper - led by Abby Gilson
#seaweed #MarineLife 🦑 #AlgalAwesomeness! #oceanfarmers

1 month ago 10 2 1 0
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MENI is back! Join us in Dublin this August 2026 for our 3rd Meeting for Microbial Evolution in Ireland. We are delighted to have @rachelmwheatley.bsky.social @drrebeccajhall.bsky.social @jpjhall.bsky.social and @tweethinking.bsky.social join us as keynote speakers this year. miniurl.com/MENI

2 months ago 42 32 2 2
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Top-down control and species composition influence nonlinearly the short-term response of experimental food webs to a nutrient pulse perturbation Abstract. Extreme weather events intensify with global change and frequently disturb aquatic ecosystems via, e.g. nutrient pulses through surface runoff. W

New paper by Laurie Wojcik et al. where we show that response to a pulse perturbation has a hump-shaped relationship with top-down control
royalsocietypublishing.org/rspb/article...

4 months ago 13 4 1 0
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Isolation, engineering and ecology of temperate phages from the human gut - Nature Human host-associated cellular products may act as induction agents for bacteriophages.

Very excited to share the latest work from our lab, which was published today in Nature!
nature.com/articles/s41...

PhD graduate and now post-doc Sofia Dahlman, along with co-senior author Sam Forster from The Hudson and other researchers from our lab and others.

6 months ago 186 75 7 3
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Broadcaster and scríbhneoir Manchán Magan dies aged 55 The writer, broadcaster and documentary maker Manchán Magan has died at the age of 55, his family has confirmed.

This is a real loss. Few people did as much as Manchán Magan to connect the Irish landscape to its language and culture. His books are impressive works of accessible scholarship and will hopefully be read for many years to come. #SpeirGorm

6 months ago 40 5 0 1
A teal flyer for a PhD opportunity to investigate how warming may change antimicrobial resistance. The project will use experiments on Klebsiella bacteria to answer questions about how temperature affects their response to antibiotics, plasmid transfer, and fitness costs. The research involves microbiology lab work, bioinformatics, and mathematical modeling. The flyer includes contact details for Dr. Daniel Padfield and the logos of the sponsoring institutions.

A teal flyer for a PhD opportunity to investigate how warming may change antimicrobial resistance. The project will use experiments on Klebsiella bacteria to answer questions about how temperature affects their response to antibiotics, plasmid transfer, and fitness costs. The research involves microbiology lab work, bioinformatics, and mathematical modeling. The flyer includes contact details for Dr. Daniel Padfield and the logos of the sponsoring institutions.

I have an MRC-funded PhD project available (www.exeter.ac.uk/study/fundin...) on how warming will change the problem of AMR. Join a small and friendly group (padpadpadpad.netlify.app/about) in (sometimes) sunny Cornwall. 🧪🦠 #microsky

Please share the ad below with anyone who may be interested.

7 months ago 38 44 2 1
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Check out this new article on null model selection for multiple stressor research. Fantastic work by Iris Pimentel from @leeselab.bsky.social within the @crc-resist.bsky.social.
Freely available at: dx.doi.org/10.1002/ece3...

8 months ago 13 6 0 1
Man seated, in red coat, white trousers and black boots. Dog sitting to left with head on man’s knee. Skin of wolf on floor under their feet

Man seated, in red coat, white trousers and black boots. Dog sitting to left with head on man’s knee. Skin of wolf on floor under their feet

Wolves were treated as a threat to livestock and hunted to extinction in Ireland, aided by bounties. Portrait of John Watson with hound at his side and skin of ‘last wolf in Ireland’ 1786 under their feet. Royal Dublin Society collection #InternationalWolfDay

8 months ago 7 3 4 0
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Was great to attend a Summer Academy of the Studienstiftung des Deutschen Volkes. Really creative and clever students - enjoyed the seminar with the students and felt honored to give an evening talk in such a nice location on trends in insect populations. #Neubeuern #Studienstiftung #Insectdecline

8 months ago 4 1 0 0
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Want to name a real virus? I have recently discovered 9 new phages which now need names! To enter, you simply need to donate to the Cystic Fibrosis Trust on my JustGiving page (£2 = 1 entry) and share your email with me on donation (see link info). Please share 💚 www.justgiving.com/page/meaghan-c-1

8 months ago 33 25 2 3

Thrilled to announce our webinar series:

🌱📈 Quantifying Ecology 📈🌱

We are collaborating with our SIG friends to bring you quantitative methods in different ecological contexts.

Kicking off with Dr @jamesaorr.bsky.social and @bes-aquaticgroup.bsky.social on 5th August. More details to come!

9 months ago 35 15 0 0
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Ecosystems have multiple interacting processes that buffer against co-occurring stressors There are multiple processes that buffer the effects of anthropogenic stressors. Much is known about how single buffering processes (e.g., biodiversity, adaptation) mitigate the effects of stressors o...

Final version published in @cp-trendsecolevo.bsky.social

Kong et al.
Ecosystems have multiple interacting processes that buffer against co-occurring stressors

www.cell.com/trends/ecolo...

10 months ago 15 4 0 0
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Making sense of (sublinear) density dependence Sublinear density dependence has been reported in numerous empirical studies and yet it is seemingly incompatible with most resource-explicit competition models. Reconciling this disconnect will either necessitate substantive revision of empirical methods or the assumptions of resource competition theory, but it also presents opportunities for original research with wide-ranging implications.

Online now: Making sense of (sublinear) density dependence

10 months ago 10 5 0 0
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Please share. 2 tenure-track T&R math/stat jobs at the University of Queensland, Australia. Amazing weather, gorgeous campus & lifestyle. 17% employer retirement contribution, lots of leave. Strong global reputation. Supports diversity @stevenstrogatz.com uq.wd3.myworkdayjobs.com/en-US/uqcare...

11 months ago 36 33 1 0

Honoured to receive the 2024 Robert May prize !! 😊 🎉 Many thanks to the @britishecologicalsociety.org
& @methodsinecoevol.bsky.social

1 year ago 26 11 3 2
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The T-series bacteriophages are reductionist models that continue to shape the field - Nature Microbiology Jeremy Barr discusses how he began studying bacteriophages, the historic use of the T-series phages and how they have shaped the field.

🚨Jeremy Barr discusses how he began studying #bacteriophages, the historic use of the T-series #phages, and how they have shaped the field.

#MicroSky #PhageSky

www.nature.com/articles/s41...

1 year ago 35 12 1 0
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Ecosystems have multiple interacting processes that buffer against co-occurring stressors There are multiple processes that buffer the effects of anthropogenic stressors. Much is known about how single buffering processes (e.g., biodiversit…

Very happy to see this paper out, wonderful collaboration with Gaowen Yang and @jamesaorr.bsky.social & other friends

Kong et al. @cp-trendsecolevo.bsky.social
Ecosystems have multiple interacting processes that buffer against co-occurring stressors

🧪
www.sciencedirect.com/science/arti...

1 year ago 17 6 0 1

We have announced the 2024 Robert May Prize shortlist, our award for early career researchers! 🏆

Follow the link below to see our shortlisted authors and their papers 🌎 🧪 👇

1 year ago 28 6 0 6
Poster for Quantitative Phage-Bacteria Dynamics Across Scales
Summer School, June 23-27, 2025, UMD
https://bit.ly/phageschool2025-umd

Poster for Quantitative Phage-Bacteria Dynamics Across Scales Summer School, June 23-27, 2025, UMD https://bit.ly/phageschool2025-umd

Reminder: application deadline upcoming for applications from MS + PhD students + postdocs for a Summer School on

Quantitative Phage-Bacteria Dynamics Across Scales
U of Maryland, College Park, June 23-27, 2025

Apply by 3/21/25:
bit.ly/phageschool2...

1 year ago 5 5 0 3
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We are looking for a #PhD student to work on the impacts of multiple stressors on native #oysters as part of the BRICONS Project co-supervised by @annikaclements.bsky.social - contact me for details on how to apply @tcddublin.bsky.social

1 year ago 12 11 0 2
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Evolution Under Competition Increases Population Production by Reducing the Density‐Dependence of Net Energy Fluxes and Growth Using experimental evolution, we determined the impact of intra- versus interspecific competition on three marine phytoplankton species. We found that the species achieved the same evolutionary outco....

Happy to share our new paper! We tested how species evolve in response to #competition. We tracked the evolution of 3 #phytoplankton species, evolved alone or together. Our main finding is that #density-dependence weakens through #evolution to increase population production. doi.org/10.1002/ece3...

1 year ago 34 12 2 1
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Check out our dispatch on apicomplexans that infect corals!

www.sciencedirect.com/science/arti...

These parasite-like partners have lost photosynthesis but retained chlorophyll... are they friend or foe?

@currentbiology.bsky.social #protistsonsky #symbiosky #microsky #coralreefs

1 year ago 44 25 3 0
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Coexistence Theory for Microbial Ecology, and Vice Versa Classical models from theoretical ecology are seeing increasing uptake in microbial ecology, but there remains rich potential for closer cross-pollination. Here we explore opportunities for stronger ....

In our new paper we discuss how modern coexistence theory can help microbial ecologists tackle fundamental & applied questions, and how microbial systems can help to push coexistence theory forward! With Andrew Letten and Dave Armitage (@darmitage.bsky.social). doi.org/10.1111/1462...

1 year ago 33 23 2 2

We are excited to announce our new seminar series highlighting research on population biology and theoretical ecology from academics and post-grads based in the Asia-Pacific. We have a great line up of speakers for the next few months. Stay tuned for more info!

1 year ago 15 11 0 2
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Now accepting applicants for 25-26 intake of our #StatisticalEcology MSc: bit.ly/3ooHNyc. A unique opportunity to develop skills at the interface of #statistics and #ecology (some partial scholarships available too). Please help me share!

1 year ago 36 45 0 0
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#ESAus2024: alcohol/food didn't affect guesses on the number of species observed in our house (answer 1,168, average ESA guess 200). An excuse to indulge at tonight's dinner. Find Andrew Rogers if you want to chat about our house biodiversity study 👉 doi.org/10.1002/ecy.... 🌍 @ecolsocaus.bsky.social

1 year ago 20 2 0 0
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A Functional Basis for the Assembly of Australian Subtropical Rainforest Tree Communities We surveyed rainforest tree communities across the Australian subtropics (spanning 600 to 2500 mm rainfall year−1) and measured functional traits on 285 (91%) of all recorded species. Hydraulic strat....

🔥 in Ecology Letters 🔥
#Traits describing hydraulic strategies and deciduousness explain the occurrence trends of almost 300 #rainforest #tree species across a steep rainfall gradient in Australia. #FunctionalTraits
dx.doi.org/10.1111/ele....

1 year ago 93 34 5 5