Advertisement · 728 × 90

Posts by Katharina Imkeller

For PhD students or postdocs who start out wanting to analyse their own high-throughput data:

1 week ago 11 7 0 0
Preview
Ultra-high-throughput IGH genotyping of 25 global populations reveals population-biased allelic diversity and homozygous V and D gene deletions The genes that encode our antibodies display extensive variation between individuals. Corcoran et al. developed a high-throughput sequence-based method for identifying variations in antibody genes (ImmuneDiscover). This enabled the sequencing of 2,486 individuals with 25 different population ancestries, identifying variations that are population specific and may underlie differences in disease susceptibility and vaccine response at both an individual and population level.

Online now: Ultra-high-throughput IGH genotyping of 25 global populations reveals population-biased allelic diversity and homozygous V and D gene deletions

1 month ago 3 2 0 0
Post image

📢 Call for Abstracts - Frankfurt Cancer Conference 2026

Present your research September 2-4 as a poster or get selected for a short talk. Share your work, get feedback, and connect at the international #FrankfurtCancerConference.

📆 Deadline: March 26, 2026
🔗 www.frankfurtcancerconference.org

1 month ago 11 6 1 0
Preview
An AI Agent Published a Hit Piece on Me Summary: An AI agent of unknown ownership autonomously wrote and published a personalized hit piece about me after I rejected its code, attempting to damage my reputation and shame me into acceptin…

AI agent goes nuts on open source maintainer after having its pull request denied. This is a pretty insane story. Open source development as we've been used to for the last few decades is likely over. 1/
theshamblog.com/an-ai-agent-...

2 months ago 60 39 5 9
Post image

Save the Date:

FRANKFURT CANCER CONFERENCE 2026

Translating Paul Ehrlich’s Magic Bullet into Novel Targeted Therapies

🕗 Wed., September 2, 2026 – Fri., September 4, 2026

📍Campus Westend, @goetheuni.bsky.social, Frankfurt/Main, DE

➡️ www.frankfurtcancerconference.org
#frankfurtcancerconference

3 months ago 5 4 0 0
Independent Research Group Leaders (f/m/d) SCALE / FIAS

The Frankfurt Institute for Advanced Studies (FIAS) and the newly funded Cluster of Excellence SCALE are seeking several Independent Research Group Leaders to drive theoretical and computational research in molecular and cellular life science.

fias.institute/de/das-fias/...

4 months ago 11 10 0 0
Post image

Great news: The #LOEWE Center Frankfurt Cancer Institute @goetheuni.bsky.social will continue to receive funding from the state of Hesse! 🎉
12 mio € for two more years – a strong signal for the importance of #translational #cancer #research in Frankfurt.
Thank you Hesse and everyone involved!!

5 months ago 8 4 0 0
Advertisement
Post image

Im @loewe-fci.bsky.social arbeiten Forschende gemeinsam an translationaler #Krebsforschung. Nun wird das #FCI weiter vom Land Hessen gefördert: Wissenschaftsminister Timon Gremmels hat heute einen Förderbescheid für die Jahre 2026/27 überreicht.

🔗 Mehr: aktuelles.uni-frankfurt.de/allgemein/12...

5 months ago 5 3 1 0

There are two complementary views of scientific advance: the "heroes" view, individual geniuses driving unique one-of-a-kind advances, and the "multiple discovery" or zeitgeist view, that the time is ripe for a discovery, and the details of who makes it first, where, and how are, well, details.(1/3)

5 months ago 16 5 1 0
Post image

📆 For those who haven't turned the page on their calendar yet, here's a reminder.

In November, we look at a colorful piece of microscopy art by Jadranka Macas (Institute of Neurology (Edinger Institute), University Hospital Frankfurt).

Read more about it here:
👉 nfdi4bioimage.de/resources-an...

5 months ago 8 1 0 0
Post image

📢 We are announcing the Adaptive Immune Profiling Challenge 2025!
Can you predict immune state labels from adaptive immune receptor repertoires?
💰 $10,000 prize pool!
🗓️ Launches Nov 5 on @kaggle.com
More Info: uio-bmi.github.io/adaptive_imm...

5 months ago 25 13 1 1
Post image

The first publication by my independent research group in collaboration with many partners in Frankfurt. @loewe-fci.bsky.social @goetheuni.bsky.social #EdingerInstitut #DKTK @schuckjonas.bsky.social @zezzenya.bsky.social

5 months ago 7 2 5 1
Post image

Our new publication in @cp-immunity.bsky.social: Tertiary lymphoid structures with signs of functional adaptive immune responses in a subset of human gliomas. Association with longer overall patient survival and more immune-permissive tumor microenvironment.

doi.org/10.1016/j.im...

5 months ago 13 11 1 1
Post image

Tertiary lymphoid structures in a subset of gliomas that show signs of functional adaptive immune activation and are associated with longer overall patient survival and an immune-permissive tumor microenvironment @cp-immunity.bsky.social
www.cell.com/immunity/ful...

5 months ago 19 6 1 0

Reminder 👇

Interested in improving our R tools for #MassSpectrometry data analysis and integrating them into Galaxy?

⏲️ 3 year position
📍 Bolzano, 🇮🇹

👉 apply if you like:

- #rstats SW development
- @bioconductor.bsky.social
- large-scale #metabolomics data analysis
- hiking ⛰️

🔗 bit.ly/46AMawx

6 months ago 7 6 1 0
Postdoc / Bioinformatician – Computational Multi-Omics for Precision Oncology (m/f/d) Pflichtfelder sind mit einem (*) markiert.

🚀 Postdoc / Bioinformatician in Computational Multi-Omics for Precision Oncology at Heidelberg University Hospital: karriere.klinikum.uni-heidelberg.de/index.php?ac...
A great short-term opportunity for anyone looking for a bridge position between PhD, postdoc, or the next career step.

6 months ago 6 2 0 0
Advertisement
EuroBioC2025 group photo on PRBB terrace with sea in background.

EuroBioC2025 group photo on PRBB terrace with sea in background.

EuroBioC2025 welcome in PRBB auditorium by host Robert Castelo, showing slides with conference sticker and sponsor logos.

EuroBioC2025 welcome in PRBB auditorium by host Robert Castelo, showing slides with conference sticker and sponsor logos.

EuroBioC2025 hexwall banner with the hexwall creator Kevin Rue-Albrecht standing beside it.

EuroBioC2025 hexwall banner with the hexwall creator Kevin Rue-Albrecht standing beside it.

EuroBioC2025 carved wooden keyring, a gift for all participants, created by Annekathrin Nedwed.

EuroBioC2025 carved wooden keyring, a gift for all participants, created by Annekathrin Nedwed.

EuroBioC2025 is in full swing here in Barcelona!

Day 1 was full of great talks, conversations, and that amazing Bioconductor community energy. Excited for what’s ahead today and tomorrow!

#EuroBioC2025 #Bioconductor #OpenScience #Community

7 months ago 18 7 0 1

Heads up: ignore samtools dot org, similarly minimap2 dot com and likely others. It's owned by a known phishing site and while the binaries they offer look valid currently (but note they may be serving us different binaries to others), that could change.

Ie: it's not us (Samtools team)! Be warned

7 months ago 146 127 2 5
Open positions - AG Imkeller

More details on our group website: agimkeller.github.io/recruit.html

7 months ago 3 1 0 0
Georg-Speyer-Haus: Doctoral Researcher Positions in Colorectal Cancer Research

PhD position available in my group in Frankfurt. Explore adaptive immune responses in metastatic colorectal cancer using multi-omics and AIRR profiling. #TRR417 @loewe-fci.bsky.social

georg-speyer-haus.de/karriere/ste...

7 months ago 3 6 1 0
Post image

Our paper identifying evidence of off-target probe binding in the 10x Genomics Xenium Breast Gene Panel is now available as a reviewed preprint at #eLife

elifesciences.org/reviewed-pre...

We look forward to revising the paper to incorporate reviewer recommendations and other updates 🧵👇

7 months ago 35 8 2 1

Reminder 📣

still time to apply to the position in my team!

- statistical modeling
- large scale #metabolomics and #proteomics data
- #rstats , #python

📍 Bolzano, ⛰️, 🇮🇹

🔗https://eurac.onboard.org/jobs/Q4301nGV

8 months ago 10 5 0 1
Preview
PhD Student Bioinformatics, Computational Biology (m/f/d) Analyze bulk and single-cell multi-omics data generated from in vivo AML models Curate and integrate public datasets (eg scRNA-seq) to derive prior knowledge on AML dormancy Develop and apply integrat...

🔬 PhD Position in Bioinformatics!
Join my group at Heidelberg University (lu-group-ukhd.github.io) to study AML dormancy & therapy resistance using multi-omics & single-cell data.
👉Apply or share: www.jobvector.de/job/bioinfor...

8 months ago 4 3 0 0

1/6 🧬 NEW COMMENTARY 🧬
Let’s talk about the challenges in immunoglobulin (IG) & T cell receptor (TR) gene nomenclature in the era of modern genomics.
A 🧵 on why it’s time to rethink how we name these genes—and what it means for immunogenetics.
#IGTR #Genomics #Immunology

9 months ago 17 4 1 1

We are currently recruiting a bioinformatics/computational biology postdoc to join the infrastructure project of a newly funded large research consortium (SFB-TRR) on Circadian Medicine between Charité - Universitätsmedizin Berlin and Universität zu Lübeck ⌚ ⏰ ⏱️ 🕰️ !

9 months ago 8 10 1 0
Video

🌟 #MeetOurDataStewards #1: Ksenia Krooß
New to bioimage data? This workshop offers a practical introduction to @nfdi4bioimage.bsky.social and I3D:bio, common challenges and the OMERO platform. Learn about image analysis tools and how to select data repositories.

👉 zenodo.org/record/13861...

9 months ago 4 2 0 0
Advertisement

Last chance to apply to this PhD position with @mlolab.bsky.social

1 year ago 2 0 0 0

🧬🖥️ #iHet code is available at: github.com/Computationa...

1 year ago 5 2 0 0
Open positions - AG Imkeller

We are recruiting a PhD student in Computational Biology to work on omics data and spatial integration in cellular immunotherapy of cancer. Joint project with the group of Florian Büttner. @loewe-fci.bsky.social
agimkeller.github.io/recruit.html

1 year ago 4 6 0 1
Open positions - AG Imkeller

Interested in understanding what B cells do in brain tumors? We offer a Master's thesis project in molecular biology / tumor immunology. Apply and join us at Edinger Institute in #Frankfurt
@loewe-fci.bsky.social
agimkeller.github.io/recruit.html

1 year ago 1 2 0 0