Two weeks left for abstract submission - please do register; it's a great UK meeting, and lots of opportunities for ECRs to share their work 👇
Posts by @tim_stasevich
💥 Paper published 💥
Curious how #SARS2 has changed since jumping into humans? We were too!
journals.plos.org/plosbiology/...
🧵 🧵 🧵
Please RT!
The Dept of Chemistry at UC Irvine invites applications for a tenured faculty position in Synthetic Organic Chemistry. Deadline: July 1, 2026.
More information about the position can be found here: recruit.ap.uci.edu/JPF10109
@uciphyssci.bsky.social
there goes the central dogma, i guess. is nothing sacred anymore?
Out in @natmethods.nature.com: More dyes. They work. Quite well. And blink. Pick the one that fits your target, your technique, and your labeling density. With too many collaborators and institutes to list, but anchored at @hhmijanelia.bsky.social www.nature.com/articles/s41...
My first, first author paper is now on #ScienceAdvances !
Linker histone H1 is a liquid-like "glue" condensing chromatin, which revises textbooks! 📖✨
science.org/doi/10.1126/sc…
Huge thanks to @kazu-maeshima.bsky.social , for supervision.
Amazing collab with @rcollepardo.bsky.social ’s group! 1/
My first PhD student‘s, Kavan Gor, paper on 5-color single-molecule imaging of co-transcriptional RNA folding is out in @science.org Advances!
He finds how RNA modification enzymes, antisense oligonucleotides and ribosomal proteins re-route nascent RNA folding.
See more details in EMBL post below!
No Kings Fort Collins
Oops, looking at my response, I meant to say they DO contain the disulfides (MPNN did not mutate the Cys residues), but the folding does not appear to depend on their presence.
A high-affinity split-HaloTag for live-cell protein labeling. And much more.
www.nature.com/articles/s41...
Yes, they do not contain the disulfides (see Fig. 5A-C mutation bias). We also showed that the scFvs do not rely on those bonds to fold (Fig. S6), which is pretty cool.
Thanks again for the nice post and blog!
Ultimately, as more functional vs. non-functional intrabodies are confirmed experimentally, I'm hoping to generate consensus 'functional' vs. 'non-functional' sequences to better rank scFv designs. Something akin to this nanobody paper from Constance Cepko's group: elifesciences.org/articles/68253
Really nice of you to provide this analysis of our paper. Thanks! As you may have noticed, what is still missing is a nice metric to predict which scFv designs will be functional inside cells. No metric we explored worked that well, although the new designs were certainly better than the originals.
And in yesterday's journal club, we discussed this nice paper on transforming antibodies into intrabodies from @tim-stasevich.bsky.social et al. The authors put together a pipeline comprising ProteinMPNN to design a stabler protein sequence for the scaffold while keeping the antigen-binding loops.
1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant!
Use it for interactive image processing, analysis, and visualisation! Really cool project from @ilan-theodoro.bsky.social from my team!
#napari #bioimageanalysis #MCP @biohub
🚨📰Now online in its full form www.nature.com/articles/s41...
Probing cancer-specific vulnerabilities? The Yeo Lab's RBP CRISPR KO In Vivo Library targets 206 RNA-binding proteins prioritized from screens in KRAS-, BRCA1-, and MYC-driven cancers. Compact size + dox-inducible Cas9 make it perfect for in vivo screens in tumor xenografts.
Kinetic proofreading as a mechanism for transcriptional specificity: www.biorxiv.org/content/10.6...
Very nice follow up to their review from last year genesdev.cshlp.org/content/39/1...
Non-equilibrium models may be key to understanding specificity in transcriptional regulation!
Great meeting up with Jan Hendrik Spille this Monday at the APS annual meeting in Denver! He showed me some fantastic movies of histone dynamics in the context of biomolecular condensates. We had some good food too! #APSSummit2026
New Preprint! When one enhancer allele changes another's regulatory output, is that bad? We found it could be a feature — interallelic cis-regulatory dominance buffers outputs AND enables evolutionary innovation. Two for one!
Led by @ottilie.bsky.social from @embl.org
doi: doi.org/10.64898/202...
Three years ago Thalia was diagnosed with a brain tumour. She had multiple surgeries, chemotherapy and radiotherapy.
This year we are walking the Nine Edges Challenge to raise awareness and money for OSCAR's Paediatric Brain Tumour Charity.
Please donate: www.justgiving.com/team/thaliaf...
The most impt change at #NIH and to US science this year is bigger than grant cancellations— it’s how the agency is governed.
For 75 years NIH has been largely independent of presidential control. That’s changed this year. New piece from me and @nataliebaviles.bsky.social in @nature.com
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Antibody of the Week
New antibodies just dropped! @ipiproteins.bsky.social has released a new ROBO/Slit antibody family available through @addgene.org. These reagents target key axon guidance and cell migration pathways. Check them out: https://twp.ai/4ixP3p
Really pleased to share the *final* version of @katiegelder.bsky.social's super work, profiling the functional roles of #IDRs in CBP. Published today 🎉
🔗https://doi.org/10.1016/j.celrep.2026.117109
#IDRs #condensates #transcription #CBP #generegulation #enhancers (1/7)
Sickening...
Awesome names for these proteases: Vesuvius and Krakatoa.
Some molecular machines, like ribosomes, can persist for long periods of time in cells.
Could molecular aging of ribosomes shape how proteins are made?
In our new preprint we track ribosomes as they age in cells and uncover unexpected effects on translation (1/10)
www.biorxiv.org/content/10.6...
So great to see this work come out from my colleague's lab @cdsnow.bsky.social at CSU. Truly a dream-come-true innovation that will really accelerate X-ray structure determination. Applications are endless. Take a look and see if your protein of interest will work.
Stackreg will do it for you. But you may need to background subtract so it focuses on the thing moving and not on background stuff.