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Posts by Gautam Dey

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New paper out in @natureportfolio.nature.com @commsearth.nature.com!

A major bottleneck in coral restoration is that newly settled corals rarely survive.

We show that simple engineered substrates can increase early-stage survivorship by ~4×.

Link to paper: rdcu.be/femTN

1 day ago 33 10 0 2
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BBC Audio | In Our Time Listen to the latest episodes of In Our Time on BBC Audio

bbc.com/audio/brand/...

Now free for all archaea lovers to hear!

12 hours ago 33 8 0 3
How to tell complex stories in an engaging way

How to tell complex stories in an engaging way: Leonid A. Klimov takes up Nature Marsilius Visiting Professorship for Science Communication at Heidelberg University www.uni-heidelberg.de/en/newsroom/...

13 hours ago 5 3 0 0

Our #UExM efforts with @gautamdey.bsky.social & @moorefound.bsky.social featured in @nature.com this month.

Beyond the #science, every image is a thing of beauty.

I think a world-tour exhibition has to happen at one point.

#Expansion #Microscopy

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Research Interested in Expansion Microscopy for your microbial eukaryotes? Through the ExÂME project, we offer free pilot tests to evaluate samples, on-site training workshops in Geneva and Heidelberg, and col...

If you want to hear more about the project or want to chat ExM, find me at ISOP (talk on Thursday) or contact us www.dudinlab.com/you-want-to-...
#ExpandThemAll
@dudinlab.bsky.social @gautamdey.bsky.social & Tom Richards
@moorefound.bsky.social

19 hours ago 16 4 0 0
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See the intricate worlds of parasites and algae — March’s best science images The month’s sharpest science shots, selected by Nature’s photo team.

Our ExM Atlas of eukaryotes is moving along with more and more images coming in - some featured in nature last month!
Culture we’re provided by @ccapoban.bsky.social & Julius Lukeš during visits last year

www.nature.com/immersive/d4...

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Interested in miRNAs, early animal evolution, and RNA biology? We’re recruiting a BBSRC-funded Postdoctoral Research Associate @bristolbiosci.bsky.social #Postdoc #microRNA #RNAbiology
Apply by 14 May 2026. 👉 www.bristol.ac.uk/jobs/find-in...

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Cell Bio 2023-An ASCB|EMBO Meeting Network, learn, and collaborate with top cell biologists from around the globe.

🚨Hear, hear, fellow microbial cell biologists!🚨
🦠 Bacterial and Archaeal Cell Biology will be represented again at this year’s CELL BIO (ASCB-EMBO) meeting! The deadline to be considered for a talk in our Minisymposium is June 9. Help us spread the word!
www.ascb.org/cellbio2026/

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Assistant Professor x6 (111522-0426) - University of Warwick Title: Assistant Professor x6 (111522-0426). Application Deadline: . Position Type: Permanent

My super department @warwicklifesci.bsky.social is hiring 6 assistant profs in the wake of recent retirements. We're looking for people in microbiology/infection, cellular disease / immunity; environmental biology; and plant/crop science. #MicroSky warwick-careers.tal.net/vx/lang-en-G...

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MEEHubs26 abstract deadline has been extended to April 26th. Come showcase your awesome Microbiology w. scientists worldwide!
meehubs2026.oa-event.com

🦠 What: awesome conference in microbial ecology and evolution, with hubs around the world
🦠 Where: Sunny* Manchester
🦠 When: 3rd-5th August 2026

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illustration of five different microbial cells and some of the chemicals they exchange with their environment

illustration of five different microbial cells and some of the chemicals they exchange with their environment

New #ISEPpapers by @ankarn.bsky.social et al.! Living together: evolutionary and ecological dimensions of #protist endosymbiosis academic.oup.com/microlife/ar...

#Protists #Microbes #Symbiosis #Evolution

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ISOP-sponsored symposium on protistan symbioses across the Tree of Life went fantastic! Thanks all contributors (Ondrej, Gillian, and @mixotrophe.bsky.social) and the best co-host, @nicolecoots.bsky.social! #ProtistsOnSky @protistologyopen.bsky.social

1 day ago 27 6 0 1
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Targeting the cell membrane in established and emerging model organisms Summary: Screening a toolkit of diverse membrane-localising tags identifies candidates that efficiently localise proteins to the plasma membrane in a wide range of animals and choanoflagellates.

Finding molecular tags that localise fluorescent proteins to the cell membrane was the goal of our latest paper, now published in Development @dev-journal.bsky.social. The tags act as address labels, sending proteins to the cell membrane, where they highlight the shape and arrangement of cells. 2/9

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New OpenFold3 preview out! (OF3p2)

It closes the gap to AlphaFold3 for most modalities.

Most critically, we're releasing everything, including training sets & configs, making OF3p2 the only current AF3-based model that is functionally trainable & reproducible from scratch🧵1/9

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And a role model to many people who’ve never had a chance to meet him!

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A series of spontaneously blinking dyes for super-resolution microscopy - Nature Methods A series of spontaneously blinking dyes in the far-red range facilitate single-molecule localization microscopy. These dyes vary in their blinking properties and can be matched to the applications and...

Out in @natmethods.nature.com: More dyes. They work. Quite well. And blink. Pick the one that fits your target, your technique, and your labeling density. With too many collaborators and institutes to list, but anchored at @hhmijanelia.bsky.social www.nature.com/articles/s41...

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Régis Giet showed that, in Drosophila neural stem cells, the number of astral microtubules nucleated by each centrosome determines the spindle position. Asymmetric pushing forces, rather than cortical pulling, dominate spindle positioning. #SpindleCroatia2026

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Jacques Pécréaux used FRAP of the half-spindle in C. elegans and revealed that only kinetochore microtubules exhibit flux, sliding along pole-anchored ones. The flux is larger on the posterior side, reflecting the imbalance in cortical pulling forces. #SpindleCroatia2026

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Monica Gobran showed that when CDK1 is partially inhibited, nuclear pores begin to disassemble, but the overall structure of the nuclear envelope remains intact, similar to closed mitosis. The spindle forms outside the nucleus. #SpindleCroatia2026

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Marija Žanić @zaniclab.bsky.social used EB1 imaging to determine the relationship between microtubule GTP-cap size and growth rate throughout the cell cycle. GTP-cap size for matching growth rates drops during mitosis, suggesting active regulation of the hydrolysis rate. #SpindleCroatia2026

6 days ago 4 1 0 0
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Arp Schnittger @schnittger-lab.bsky.social examined kinetochores in plant meiosis, focusing on how mono‑orientation of sister kinetochores is achieved. Arabidopsis has a homolog of Csm1, a monopolin component, with a function in kinetochore organization and mono‑orientation. #SpindleCroatia2026

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Gautam Dey @gautamdey.bsky.social discussed spindle evolutionary dynamics. In Chlamy, an MTOC forms in prophase to nucleate the spindle, but remains tethered to the basal bodies. By using ExM, they plan to expand every microbial eukaryote on Earth! #SpindleCroatia2026

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Punctuated Evolution of Endomembrane Compartments in Proto-Eukaryotes www.biorxiv.org/content/10.64898/2026.04...

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a simplified evolutionary tree of eukaryotes with pictures of various microbes

a simplified evolutionary tree of eukaryotes with pictures of various microbes

New #ISEPpapers #preprint by @deemteam.bsky.social: Re-evaluating the eukaryotic Tree of Life with independent phylogenomic data www.biorxiv.org/content/10.6...

#Protists #Microbes #Evolution #Eukaryotes #TreeOfLife #Phylogeny #Phylogenomics #Bioinformatics #Algae

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Wei Ming Lim from the Surrey lab @surreylab.bsky.social reconstituted fluxing anaphase-like mini-spindles by using only 4 purified proteins: tubulin, PRC1, KIF4A, and kinesin-5. #SpindleCroatia2026

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Andrea Musacchio @andrea-musacchio.bsky.social talked about the hardware and the operating system of the human kinetochore. He showed that SKA binds to a new hinge formed by NUF2 and NDC80. #SpindleCroatia2026

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Rumen Stamatov @rstamatov.bsky.social presented his amazing method for tracking individual chromosomes with microscopy and deep learning, revealing a chromosome flow field in prometaphase, compaction kinetics of chromosomes, and their locations in mother and daughter cells. #SpindleCroatia2026

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Meredith Betterton showed that PRC1 accumulation at overlap edges drives PRC1 tilting, tighter spacing of the microtubules, and more resistance to sliding forces. Motor-crosslinker force balance sets the microtubule separation. #SpindleCroatia2026

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Bonnibelle Leeds developed simulations of biorientation in yeast, which predict rapid biorientation. Error correction occurs due to four mechanisms: catch bond, Aurora, geometric bias, and direction-sensitive grip. #SpindleCroatia2026

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Thomas Müller-Reichert showed that in C. elegans embryos, spindle length scales with cell size, but chromosome segregation dynamics remain constant. In RPE1 cells, 11-12 microtubules are attached end-on to each kinetochore, and monopolar spindles have a twist. #SpindleCroatia2026

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