New Galaxy Tool: BiaPy – Deep Learning for Bioimage Analysis in Galaxy Perform advanced deep-learning-based workflows for image segmentation, classification, and reconstruction

BiaPy in Galaxy. Check it out! 🤓

galaxyproject.org/news/2025-10...

BiaPy is now In Galaxy!! Don't miss the chance of using it to build your workflows in the cloud ;D

Looking for a PhD in AI & bioimage analysis? 🤠This is basically the ‘boss level’ of opportunities: cutting-edge research + a mentor you’d actually want to have coffee with. Don’t miss it 👇

In the meantime, we have more than 46 pretrained models from ⛴️ BiaPy available now in the 🦒 Bioimage Model Zoo 🫶 @ai4life.bsky.social

🔗 Have a look at: bioimage.io#/models

As usual, they are accesible from BiaPy's GUI 🖥️, Colab notebooks 📔 and our API 🤓

⛴️ BiaPy just reached version 3.6.1 💫 (latest release)!

github.com/BiaPyX/BiaPy...

➡️ v3.6.1 came right after (the more dense) v3.6.0 to fix some small bugs 🐞

Let me tell you a bit about what's new 👇

Prou (ex-)supervisor & (always) mentor of @ai4life.bsky.social @egomezm.bsky.social Teresa Zulueta Coarasa; @danifranco93.bsky.social @cfusterbarcelo.bsky.social Carlos Garcia Lopez de Haro @uc3m @cienciauc3m

💬 After lunch, we’re back with the AI4Life Community: tool builders, research infrastructures, and industry voices. Community tools like @biapyx.bsky.social and SpotMAX show how AI4Life partners are building bridges between developers and end users.

@biapyx.bsky.social & Bioimage Model Zoo making people Happy! 😅 at #neubiaspasteur2025 @jwpylvanainen.bsky.social @ai4life.bsky.social

Wow, BiaPy is glowing with the magic touch of @jwpylvanainen.bsky.social ! 😍

No words needed! #neubiaspasteur2025 @iarganda.bsky.social @danifranco93.bsky.social @biapyx.bsky.social Thank you @jwpylvanainen.bsky.social

Don’t miss the opportunity to work with a scientist like @iarganda.bsky.social !! Kind, honest and brilliant! Plus, the position is located in the beautiful Donostia / San Sebastian. What more do you need? 👇👇

a man with dreadlocks and a beard is wearing a pirate hat and pointing at something . ALT: a man with dreadlocks and a beard is wearing a pirate hat and pointing at something .

Kudos to you, my captain! 🦸‍♂️

So happy to see this finally out! 🤗 Amazing job from an awesome team: @ivanhcenalmor.bsky.social, @aaitorg.bsky.social, @caporalclement.bsky.social, @lmescu.bsky.social, @arratemunoz.bsky.social munoz.bsky.social, & more! Specially proud of @danifranco93.bsky.social that dedicated his PhD to this 🥰

Finally BiaPy is out in Nature Methods! 🥳🥳🥳

A major milestone in my research! I'm incredibly proud of the progress made. Huge thanks to my PhD supervisors, @iarganda.bsky.social and @arratemunoz.bsky.social , for their invaluable guidance and support throughout this journey.

Check out the thread🧵👇

Screenshot of BiaPy notebook showing the installation section. The first part of section reads "Play to reinstall Colab libraries so they are compatible wiht BiaPy. ⚠️ Wait until this cell is fully executed to run the next one ⚠️ This will make the notebook restart. Do not worry and continue executing the next cell once this one is finished."

🆕 Did you experience troubles ⚠️ while installing BiaPy in our Google Colab notebooks? We did too! This is due to some updates in the default libraries of Colab. As a temporary solution, we have now included a new cell in the notebooks to reinstall the conflicting libraries 👇

BiaPy GUI: Import models from the BioImage Model Zoo YouTube video by BiaPy

🆕 Now that the bugs have been fixed 🙃, we have a new video 📹 tutorial on how to import pretrained models from the BioImage Model Zoo 🦒 into your #BiaPy workflow using our friendly GUI 🖥️, by @iarganda.bsky.social:

youtu.be/Zq50Ew1s8ag

It took me more than 4 years to capture a scene I could only dream of. A magnificent Condor soars above the peaks of Argentina's Mount Fitz Roy, as they are spot lit in beautiful morning light. 🪶

#bluesky #photography #landscape #birds #nature
#landscapephotography #naturephotography #travel #scape

Don't miss the chance to check what's new in BiaPy's GUI! 😍

When you’re imaging and your sample takes a Pikachu!
Having fun playing around with our new #Nikon NSPARC for #FluorescenceFriday
#microscopy #myosin #epithelial #cellbiology #meme
@tyskalabactual.bsky.social

Hello! Can you add me?
Personal web: danifranco.github.io
Google Scholar: scholar.google.com/citations?us...

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Check out #ZebrafishZunday every Sunday for fintastic fish #sciart! 🧪

Is there any list I can join to see posts related to connectomics? 🧪🧪

BiaPy graphical user interface walkthrough YouTube video by BiaPy

Did you like what you heard about BiaPy at #SPAOM2024? 🔬 Are you interested in giving its GUI a try? 🖥️🧙 Search no more! Here you have our walkthrough video tutorial on BiaPy's GUI by @danifranco93.bsky.social 🤗

Let us know your thoughts, all feedback is welcome! 🤩

youtu.be/vY7aBh5FUNk?...

With how easily I get cold, I’ve had the luck to come to Cambridge during the coldest weeks of the year, according to the locals! Lucky me! 🧊🧊❄️❄️

Don't miss the chance of knowing the last updates of BiaPy in #SPAOM2024!!! 🔬🤓

This paper is incredible. EM level connectomics on a light microscope.

www.biorxiv.org/content/10.1...

Discover the key to unlocking impactful scientific contributions in the world of machine learning! 🤖📈 Making models and data available increases the visibility of work and enables easier collaboration on future work.

Discover the key to unlocking impactful scientific contributions in the world of machine learning! 🤖📈

This tutorial aims to increase the quality of scientific contributions using reproducible methods, appropriate validation techniques, and better code quality. 🧪

Los tuits con bulos sobre salud tienen mucho más alcance que los científicos porque sus seguidores son mucho más activos y fanáticos.

Así que si veis información interesante y de calidad: compartid y dad like.

Es otra forma de luchar contra ellos.