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Posts by Lucas Farnung

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Early Career Faculty Program | Freeman Hrabowski Scholars | HHMI The Freeman Hrabowski Scholars Program offers comprehensive support to outstanding early career faculty committed to scientific excellence in their own research, and to fostering labs that expand the ...

@hhmi-science.bsky.social's
#FreemanHrabowski Scholars Program offers early career faculty up to $10M over 10 yrs, plus salary & benefits

Stable, sustained support can transform your career:

Senior Postdoc? This year's competition has a program for you too. Applications open 11/3! bit.ly/4vhC0LA

1 day ago 74 52 5 1
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Finally published at long last (at least in the pre-view version). Explore the wild and woolly world of archaeal histones! Interactive archaeal histone graph incluced rdcu.be/fdFjv. Congratulations to first author Shawn Laursen

2 days ago 69 27 3 0
BenchOS Equipment Booking

BenchOS Equipment Booking

BenchOS drives E Ink paper displays to show equipment bookings.

BenchOS drives E Ink paper displays to show equipment bookings.

Rendered E Ink paper display of AKTA ATLANTA equipment booking status.

Rendered E Ink paper display of AKTA ATLANTA equipment booking status.

Next BenchOS update: BenchOS contains an equipment booking system. E Ink displays automatically update and show the current equipment booking status of our instruments. Check out how this looks like for our AKTA Atlanta.

2 days ago 8 1 0 0

And integrate the information back into a private knowledgebase web app.

1 week ago 3 0 0 0

Abstract deadline extended to April 20 for the FASEB #UbiqSRC, colocated with the #ProtFoldSRC, June 1-4 in Louisville! Register for one of the ~20 talk slots throughout the main meeting and pre-meeting career forum!

events.faseb.org/event/Ubiqui...

2 weeks ago 4 3 0 0
BenchOS' cryo-EM storage tracker.

BenchOS' cryo-EM storage tracker.

BenchOS is taking shape. Today, our cryo-EM storage tracker.

2 weeks ago 14 2 0 0
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Structural basis of supercoiling-induced CRISPR–Cas9 off-target activity - Nature Cas9 structures explain topology sensing and off-target activation.

1/11 In our story out today in @nature.com , we showcase the molecular mechanisms that enable Cas9 to bind and cleave negatively supercoiled ((-)SC) off-targets! 🧬🧵

🔗 www.nature.com/articles/s41...

#CRISPR #Cas9 #DNATopology #AFM #CryoEM #SingleMolecule #Biophysics

3 weeks ago 60 20 2 4

Glückwunsch, Bruderherz! Really outstanding work by @bartellab.bsky.social and Schulman Lab. This is how transatlantic research is done 🇺🇸🇩🇪.

4 weeks ago 16 2 0 0
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The E3 ubiquitin ligase mechanism specifying target-directed microRNA degradation (TDMD) is now published! 🎉🍾 We, @bartellab.bsky.social and Schulman lab, describe how 2-RNA factors control protein degradation by recruiting an E3 ligase. @mpibiochem.bsky.social
www.nature.com/articles/s41...

4 weeks ago 83 38 1 3
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The longest-running UB/UBL conference, join @labjoazeiro.bsky.social and @sshaolab.bsky.social, for #UbiqSRC. Featuring keynotes by @idikic.bsky.social of @goetheuni.bsky.social with Jeff Kelly from @scripps.edu.bsky.social. Submit your abstract and register to join us in Louisville: buff.ly/uAY0w0M

1 month ago 2 3 0 1

This is neat. Do you reckon we will get end-to-end agentic structure refinement soon?

1 month ago 0 0 1 0

Is there documentation for Agentic Coot?

1 month ago 0 1 2 0
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His Harvard Lab Was Thriving. Then Came the Cuts.

NYT feature on their website's front page about our local C. elegans colleague Will Mair and NIH funding
www.nytimes.com/2026/03/13/u...

1 month ago 55 21 1 2
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Research Technician - Zhang Lab Primary Work Address: One Shields Avenue, Davis, CA, 95616 Current HHMI Employees, click here to apply via your Workday account. The Howard Hughes Medical Institute (HHMI) advances the discovery and s...

Our lab is hiring a research technician! We are interested in reproduction, stem cells, and development. If you are seeking a robust 2-year career experience before the next chapter of your educational journey, this is the position for you!

hhmi.wd1.myworkdayjobs.com/en-US/Extern...

1 month ago 8 5 0 0

Congrats, Roberto. Bringing biochemistry of transcription to the 21st century!

1 month ago 1 0 1 0

@triggerloop.bsky.social not to sidetrack you here but…

1 month ago 9 5 1 0
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🚨New preprint! We built a cell-free genomics platform (GATO-seq) to probe transcriptional regulation and discovered a “super pause” sequence that triggers a new Pol II active-site conformation. Huge shout-out to @robertovn.bsky.social for pulling off this monster of a project. tinyurl.com/superpause

1 month ago 49 12 0 1
DNA Absorption Coefficient Calculator

Calculate DNA absorption coefficients for single-stranded and double-stranded DNA: absorptiondna.farnunglab.com

2 months ago 9 0 0 0
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Please join Andreas Ladurner and me for the GRC Chromatin Structure and Function conference to be held near Barcelona Spain from May 31-June 5! We accepting abstracts for posters and talks. The meeting is preceded by an awesome GRS. Learn more in our video below and apply www.grc.org/chromatin-st...

2 months ago 36 16 0 0

BenchAid🧪 is so great that we even decided to build our own ELN (called LabBook) that we will share with the community soon. LabBook combines ELN and lab registry to make many operations (like complex buffers for biochemical experiments) directly computable by BenchAid.

2 months ago 0 0 0 0

Your data stays on your machine*. SQLite database, local files, no cloud dependency. Full control. (*Non-local models will still result in the data being shared with the agent provider.)

2 months ago 0 0 0 0
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One example where BenchAid really excels is the automatic checking of @plasmidsaurus.bsky.social sequencing results early in the morning:

2 months ago 1 0 2 0
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🧪✨ Introducing BenchAid🧪! Our new molecular biology AI agent is live at benchaid.farnunglab.com. Over the last months, we built BenchAid🧪 to streamline many of our bench workflows to help move our lab faster. Try it out!

2 months ago 24 5 2 0
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Happy to share part of my postdoctoral work at the @lucas.farnunglab.com lab. Great collaboration with @voslab.org and @andersshansen.bsky.social. “Structural basis for CTCF-mediated chromatin organization” www.biorxiv.org/content/10.6...

2 months ago 30 10 0 0

If you like our story here, consider applying to our labs for your post-doc! We have exciting projects ranging from transcription and DNA replication to genome organization and chromatin remodeling (and even lab automation and agentic molecular biology AI, more on this soon)!

2 months ago 5 0 0 0

This was a serendipitous finding with so many involved (👀 @voslab.org and @andersshansen.bsky.social). Especially proud of Farnung Lab contributors @mosorio91.bsky.social (on the job market) and PhD candidate Alex Stone. Biochemistry, structural biology, and cell-based assays (Micro-C!!!).

2 months ago 15 5 0 0
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🚨Preprint alert🚨 How does chromatin “architecture” form at CTCF sites? Our new preprint with @voslab.org and @andersshansen.bsky.social shows CTCF dimerization promotes nucleosome oligomerization on chromatin. tinyurl.com/CTCF-nucleos...

2 months ago 69 18 0 3

If you are looking for more history and inspiration from Freeman Hrabowski, his TED talk is very powerful. Well worth the 15 minutes.

www.ted.com/talks/freema...

2 months ago 7 1 0 1
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2026 is young. Hopefully, there is going to be more exciting research to come!

2 months ago 0 0 0 0
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🧪🧬New preprint We present cryo-EM structures of reconstituted CTCF–nucleosome complexes, showing CTCF dimerization drives nucleosome oligomerization into defined higher-order assemblies. Disrupting CTCF–CTCF interfaces in mESCs reduces looping and impairs differentiation. tinyurl.com/CTCF-nucleos...

2 months ago 124 52 4 3