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Posts by Marlies Oomen

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TBP regulates transposable element expression in early mouse embryos - The EMBO Journal The activation of the embryonic genome is a crucial step in development. In addition to thousands of genes, many transposable elements (TEs) are robustly transcribed during early mammalian development...

Which transcription factors control transposable element expression during zygotic genome activation?
Gain-of-function screen by @metorrespadilla.bsky.social and coworkers identifies TBP as direct regulator of mouse endogenous retrovirus-like elements
link.springer.com/article/10.1...

4 weeks ago 9 7 0 0
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Just out! 👀 for TFs that regulate TEs.Clara's work with @tamas-schauer.bsky.social @marliesoomen.bsky.social @palmrinmoy.bsky.social and bluesky-less lab members 🌎 identifies TBP as a regulator of specific ERVL class: MaLRs in 🐭embryos -as always -feedback welcome👍

link.springer.com/article/10.1...

1 month ago 35 11 1 0

Very grateful to everyone who made this work possible. I feel incredibly lucky to have worked with such an amazing team.

Special thanks to: Jakob El Kholtei, KJ Jenie, @mcolomerr.bsky.social, and of course our wonderful collaborator Bogdan Bintu and my mentor @schierlab.bsky.social

1 month ago 45 8 3 2

Incredibly proud to share our new preprint, lead by the Incomparable Rithika Sankar.
Here we temporally dissect the role of FACT in mES cells, finding that FACT loss drives progressive deterioration of chromatin architecture, leading to transcriptional collapse.
www.biorxiv.org/content/10.6...

1 month ago 44 26 1 1
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The molecular evolution of vertebrate organs Nature Ecology & Evolution - This Review discusses recent advances in the molecular evolution of vertebrate organs, including rates of evolution of organs and cell types, molecular mechanisms...

Our internal organs are evolutionary marvels. New technologies are transforming our understanding of the evolution of vertebrate organs. You can find more by reading here:
rdcu.be/e5EgU
#EvoBio #EvoDevo 🐟🦎🐢🦇🐊🦜

1 month ago 141 54 2 5

I had a lot of fun putting this together with @suminkim.bsky.social and @andersshansen.bsky.social! Glad to have had the chance to work on it!

2 months ago 27 9 1 2

I am also (i) very stressed, (ii) very thrilled and (iii) on the job market

2 months ago 12 2 1 0

PEOPLES OF EARTH: BE PREPARED 🧪

2 months ago 48 13 1 1
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New preprint!! 🚨 Did you know that many vertebrate species determine sex based on environmental conditions rather than chromosomes? Some turtles, like Trachemys scripta, rely on temperature. We learned more about how this happen molecularly.👇
www.biorxiv.org/content/10.6...

2 months ago 20 13 1 3

The final (and my favorite) chapter of my PhD is now officially published!

Extremely grateful to all our collaborators, especially to @marisepp.bsky.social and @tyamadat.bsky.social for their hard work, and to @steinaerts.bsky.social and @kaessmannlab.bsky.social for their guidance and advice!

2 months ago 16 1 0 0
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Tissue-specific restriction of transposon-derived regulatory elements safeguards cell-type identity Milovanović et al. uncover a mechanism by which KZFPs restrict the activity of transposon-derived cis-regulatory elements to safeguard cardiomyocyte functionality. This work extends the classical TE-K...

It is finally out! If you are interested in TE-derived CREs, and newly described, but evolutionary old KZFP-TE mechanistic modalities, read it at www.cell.com/cell-reports....
Thankful to everyone who took part in this work, namely @orpsf.bsky.social and other @trono-lab.bsky.social members. 🫀🧬✨

2 months ago 41 14 0 1

Very excited to receive this award and truly grateful to the @bscb-official.bsky.social who have been supporting me throughout my postdoc since I moved to the UK!

2 months ago 37 2 3 1
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Cow Tools!

We have lived alongside cows for nearly 10,000 years.
We breed them and exploit them

It is now, only now, that we have discovered THEY CAN USE TOOLS

Here I describe our study

(paper) www.sciencedirect.com/science/arti... in @currentbiology.bsky.social
with @auersperga.bsky.social

3 months ago 1321 539 26 109
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4D Nucleome Consortium produces detailed models of the 3D genome over time in cells The 4D Nucleome Consortium has extensively mapped and analyzed the 3-D folding of the human genome in human embryonic stem cells and immortalized fibroblasts over time.

Work by the 4D Nucleome Consortium, led by Job Dekker, PhD, reveals a systematic map of the structure and function of the human: direc.to/ooab

#genome @jobdekker.bsky.social @hhmi-science.bsky.social @nature.com @marionicodemi.bsky.social @creminslab.bsky.social @gladstoneinst.bsky.social

3 months ago 8 3 0 0

I’ve been so lucky to be part of the PI Programme by @biologists.bsky.social this past year and met so many incredible people! Come hear us talk about what keeps us up at night this Wednesday!

3 months ago 5 3 0 0
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"It is crucial for us, young scientists, to come together from different countries and build a network," says Marlies Oomen, EMBO Postdoctoral Fellow at Helmholtz Munich. 🧪

www.embo.org/people/global-mobility-s...
#networking #LifeSciences #research #funding

3 months ago 7 2 0 1
Development presents…
Wednesday 14 January 15:00 GMT/UTC
Chair: Priti Agarwal
Chee Kiang (Ethan) Ewe Tel Aviv University
‘Neuronal oversight of germline small RNAs prevents heat-induced sterility in Caenorhabditis elegans’
Max Farnworth University of Bristol
‘How the evolution of spatial foraging shaped centres of cognition in Heliconiini butterflies’
Sonya Widen IMBA, Vienna BioCenter 
‘“Unpacking” eukaryotic horizontal gene transfer: Mavericks transfer novel “cargo” genes across the globe’
#DevPres | @dev-journal.bsky.social
thenode.biologists.com/devpres

Development presents… Wednesday 14 January 15:00 GMT/UTC Chair: Priti Agarwal Chee Kiang (Ethan) Ewe Tel Aviv University ‘Neuronal oversight of germline small RNAs prevents heat-induced sterility in Caenorhabditis elegans’ Max Farnworth University of Bristol ‘How the evolution of spatial foraging shaped centres of cognition in Heliconiini butterflies’ Sonya Widen IMBA, Vienna BioCenter ‘“Unpacking” eukaryotic horizontal gene transfer: Mavericks transfer novel “cargo” genes across the globe’ #DevPres | @dev-journal.bsky.social thenode.biologists.com/devpres

Join us next week for #DevPres to hear 3 of our PI fellows talk about the environment & evolution

14 January 15:00 GMT/UTC

With talks from @ethanewe.bsky.social, @maxfarnworth.bsky.social & @sonyawiden.bsky.social, chaired by @pritiagarwal.bsky.social.

us02web.zoom.us/webinar/regi...

#DevPres

3 months ago 18 14 1 1
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Interphase chromosome conformation is specified by distinct folding programmes inherited through mitotic chromosomes or the cytoplasm Nature Cell Biology - Schooley et al. find that mitotically bookmarked loci drive a transient chromosome folding state during G1 entry that is subsequently modulated by factors inherited through...

Happy to share that my postdoc work with @jobdekker.bsky.social is out!
rdcu.be/eWHD2

We characterize interphase chromatin folding programs with distinct modes of mitotic inheritance and identify the chromosome-intrinsic capacity to form a microcompartment of active CREs during mitotic exit.

3 months ago 33 12 4 0
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After a long journey, I'm happy to share that my PhD work is finally published in Nature Communications. Grateful to all my co-authors!

3 months ago 8 4 0 0

🚨Our story is published! Same bones but + dissection of MERVL’s role integrating signals from #ZGA factors, & + about pathological DUX4 activation of NOXA #TEsky. Thanks to all revs for their helpful comments improving the ms. Even #rev3 - until they ghosted us 😜

www.science.org/doi/epdf/10....

3 months ago 30 12 0 0
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Interphase chromosome conformation is specified by distinct folding programmes inherited through mitotic chromosomes or the cytoplasm - Nature Cell Biology Schooley et al. find that mitotically bookmarked loci drive a transient chromosome folding state during G1 entry that is subsequently modulated by factors inherited through the cytoplasm.

Exciting new paper out! @allanaschooley.bsky.social and Sergey Venev led this project that let to the discovery of two chromosome folding programs: one inherited via mitotic chromosomes and one mitotic inherited through the cytoplasm!

www.nature.com/articles/s41...

3 months ago 75 39 1 1
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Apply for Development's Pathway to Independence programme - the Node Development are currently welcoming applications for our Pathway to Independence (PI) programme, which aims to support a small number of researchers in

Apply for Development's Pathway to Independence programme

The programme aims to support a small number of researchers in the fields of developmental biology, stem cells and regeneration as they transition from postdoc to group leader. Read more ⬇️

thenode.biologists.com/apply-for-de...

4 months ago 9 14 0 1

I recommend any Developmental biologists planning to start the road to becoming a PI next year to apply! The help and guidance you will receive are valuable but being a part of a cohort of people living through the same experiences is worth its weight in Gold!

4 months ago 17 7 0 0

Join us at SMBE26! We are in a golden period for understanding the evolution of gene regulation.

4 months ago 18 9 0 0
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An integrated view of the structure and function of the human 4D nucleome - Nature The 4D Nucleome Project demonstrates the use of genomic assays and computational methods to measure genome folding and then predict genomic structure from DNA sequence, facilitatin...

A major output of the 4D Nucleome project appeared today. This is the joint effort of many scientists working together and (publicly) sharing data and results for several years. We hope this is of interest to many genome biologists!

www.nature.com/articles/s41...

4 months ago 109 55 2 5
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Just got back to Munich after a wonderful Pathway to Independence retreat to the @biologists.bsky.social @dev-journal.bsky.social headquarters. Highly recommend applying to the program; you will find an amazing group of peers and get training + support throughout your transition to independence!

4 months ago 14 0 0 0
Anzy Miller, Martina Cerise, Giulia Paci, Max Farnworth, Sonya Widen, Marlies Oomen, Ethan Ewe, Joaquín Navajas Acedo and Toshimichi Yamada.

Anzy Miller, Martina Cerise, Giulia Paci, Max Farnworth, Sonya Widen, Marlies Oomen, Ethan Ewe, Joaquín Navajas Acedo and Toshimichi Yamada.

We were delighted to welcome our most recent Pathway to Independence (PI) fellows to our offices at @biologists.bsky.social for leadership training.

Find out more about our PI fellows and how to apply here:
journals.biologists.com/dev/pages/pi...

Application deadline: 2 February 2026.

4 months ago 40 5 0 5
We are sitting around a busy, long dinner table, all wearing color paper crowns and smiling

We are sitting around a busy, long dinner table, all wearing color paper crowns and smiling

Great day with these certified knuckleheads that are absolutely the best (and future) of their fields 🧪 @ethanewe.bsky.social @marliesoomen.bsky.social @giuliapaci.bsky.social @amjeve.bsky.social @maxfarnworth.bsky.social @anzymiller.bsky.social Martina and Toshi

4 months ago 45 4 1 1
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Development's Pathway to Independence Programme Our grants support and encourage the sharing of knowledge throughout the community by facilitating international collaboration, event attendance and the organisation of scientific meetings, conference...

Applications are open for @dev-journal.bsky.social 2026 Pathway to Independence (PI) programme, supporting postdocs applying for group leader positions:

Mentoring
Profile raising
Leadership training
Network building

Spread the word...

www.biologists.com/grants/devel...

4 months ago 73 83 0 1
Pathway to Independence
Support postdocs on the job market
Line drawing of a person at a bench transitioning to working at a desk
Development

Pathway to Independence Support postdocs on the job market Line drawing of a person at a bench transitioning to working at a desk Development

Apply for our Pathway to Independence (PI) programme, supporting postdocs in #devbio and #stemcell research during the transition to their first group leader position: www.biologists.com/grants/devel...

Application deadline: 2 February 2026.

4 months ago 38 36 2 6